PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28699
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 476aa    MW: 53982.7 Da    PI: 6.5151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28699genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH40.45.2e-13302348354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++h e+Er+RR+++N++f  Lr ++P+       +++Ka+ L  Av+YI++L
  Tp57577_TGAC_v2_mRNA28699 302 MNHVEAERQRREKLNHRFYALRAVVPNV-----SRMDKASLLSDAVDYINEL 348
                                5899***********************6.....4***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142152.1E-4229188IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.498299348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-18299363IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000839.28E-14302353No hitNo description
PfamPF000101.7E-10303348IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.3E-17303364IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003538.5E-16305354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 476 aa     Download sequence    Send to blast
MEDFILSPSS YSSMISLPHE NPSQQTQTLQ KKLQLLLQTQ SNNWVYAIFW QTTKDEKGNT  60
FLSWGEGHFQ GTKETTTISS NKRNDTDTDT STNGDAEWFY VMSLTRNFSV GNSSSISLPG  120
KAFALDSVLW LNSKHELQFY NCERSNEAHM HGIETLICIP TTNGVIEMGS YENIQQNWNL  180
VHQAKSMFQS TSSESNSKLD LISTTPLDKN QTFDQNISLS DMGLLSCARG TGDETKETQK  240
IMNKKLQPKH NIDVSSCYVD SEHSDSEYCP QLETPKSDYV DEKRELKKRG RKPLTGTTQT  300
PMNHVEAERQ RREKLNHRFY ALRAVVPNVS RMDKASLLSD AVDYINELKS KIKDLESEKK  360
RESKKVKMET MDNQSTMTTS TVVDQKRPNS VNALDIDVKI IGNDAMIRVQ SENVNHPGVR  420
LMSALRNLDF QVHHANISCV NHVMLQDVVV VQIPKEMRNE VSLKSAILMR LDDPE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-28221882192Transcription factor MYC3
4rqw_B3e-28221882192Transcription factor MYC3
4rs9_A3e-28221882192Transcription factor MYC3
4yz6_A3e-28221882192Transcription factor MYC3
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28699
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013444575.10.0transcription factor MYC2
TrEMBLA0A2Z6MBV40.0A0A2Z6MBV4_TRISU; Uncharacterized protein
STRINGXP_004510627.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF84134116
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.14e-76bHLH family protein