PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA28655

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 763aa MW: 87025.9 Da PI: 6.5359

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA28655	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	64	4.1e-20	59	155	1	90
FAR1 1 kfYneYAkevGFsvrkskskks.krngeitkrtfvCskegkreeekkk...tekerrtraetrtgCkaklkvkkek...dgkwe 77 +fY+++Ak+ GFs+r+++++ + + +t+r+f+C + g+++++ ++ k++r+r+++r+gC+a +++ k+ +w+ Tp57577_TGAC_v2_mRNA28655 59 EFYCSFAKQFGFSIRRHRTRGKdGVGRGVTRRDFTCHRGGFPQNKPSEdggGGKAQRNRKSSRCGCQAYMRIVKRVdfdVPEWR 142 6*************9998874556679**********9999988889999***********99887676789 PP FAR1 78 vtkleleHnHela 90 vt +++ HnHel Tp57577_TGAC_v2_mRNA28655 143 VTGFRNIHNHELL 155 ***********96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	5.1E-17	59	155	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	2.3E-23	278	370	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.594	542	590	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	9.4E-7	564	587	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	3.4E-6	565	592	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 763 aa Download sequence Send to blast
MSEGASLVLE SSENGTDLSQ DDIGTVEETP EETILSRQTS VNLVPFIGQR FVSQEAAYEF 60 YCSFAKQFGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGFP QNKPSEDGGG GKAQRNRKSS 120 RCGCQAYMRI VKRVDFDVPE WRVTGFRNIH NHELLKSNEV HLLPSHCPIS PDDKSRICIF 180 AKAGMSVRQM LRLMELEKGI KLGCLPFTEI DVRNLLQSFR NVDKDNDAID LIAMCKRLKD 240 ENHNFKYEFK IDSNNRLEYI AWSYGSSIQS YEVFGDAVVF DTTYRVEAYD MLLGIWLGVD 300 NNGMLCCFSC ALLRDENMLS FSWALKAFLG FMKGKAPQTI LTDHNTWLKD AIAVEMPESK 360 HAFCIWHILS KFSDWFSILL GSQYDLWKAE FHRLYNLEMV DDFEEGWRLM VNKYGLHANK 420 HIISLYSLRT FWALPFLRRY FFAGLTSTCQ TESINVFIQR FLSAQSQPER FLEQVADIVD 480 FNDRAGPKQK MQRKMQKVCL KTGSPIESHA ATILTPYALS KLQEELVSAP QYASFLVDEG 540 VFQVRHHSQT DGGCKVLWLP CQEHISCTCH LFEFSGILCK HVLRVMSTNN CFHIPDQYLP 600 VRWRSIGSSS LNHFQGTTSR DQPERIQFLE SLVSTLLMES VETDERLDVA CDQVSMVLSR 660 IKTLPRSSHG VNDITFNYAS DSLIPPEVED TDEMIHGFTI ANTHDSMALG KLKDRRARDG 720 VDLSRKCRQF SAPLCGQYGH DESDCSIMAD DNINEDALGY MQ*

Sequence ? help Back to Top

Protein Sequence Length: 763 aa Download sequence Send to blast

MSEGASLVLE SSENGTDLSQ DDIGTVEETP EETILSRQTS VNLVPFIGQR FVSQEAAYEF  60
YCSFAKQFGF SIRRHRTRGK DGVGRGVTRR DFTCHRGGFP QNKPSEDGGG GKAQRNRKSS  120
RCGCQAYMRI VKRVDFDVPE WRVTGFRNIH NHELLKSNEV HLLPSHCPIS PDDKSRICIF  180
AKAGMSVRQM LRLMELEKGI KLGCLPFTEI DVRNLLQSFR NVDKDNDAID LIAMCKRLKD  240
ENHNFKYEFK IDSNNRLEYI AWSYGSSIQS YEVFGDAVVF DTTYRVEAYD MLLGIWLGVD  300
NNGMLCCFSC ALLRDENMLS FSWALKAFLG FMKGKAPQTI LTDHNTWLKD AIAVEMPESK  360
HAFCIWHILS KFSDWFSILL GSQYDLWKAE FHRLYNLEMV DDFEEGWRLM VNKYGLHANK  420
HIISLYSLRT FWALPFLRRY FFAGLTSTCQ TESINVFIQR FLSAQSQPER FLEQVADIVD  480
FNDRAGPKQK MQRKMQKVCL KTGSPIESHA ATILTPYALS KLQEELVSAP QYASFLVDEG  540
VFQVRHHSQT DGGCKVLWLP CQEHISCTCH LFEFSGILCK HVLRVMSTNN CFHIPDQYLP  600
VRWRSIGSSS LNHFQGTTSR DQPERIQFLE SLVSTLLMES VETDERLDVA CDQVSMVLSR  660
IKTLPRSSHG VNDITFNYAS DSLIPPEVED TDEMIHGFTI ANTHDSMALG KLKDRRARDG  720
VDLSRKCRQF SAPLCGQYGH DESDCSIMAD DNINEDALGY MQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Putative transcription activator involved in regulating light control of development.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA28655

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269\|PubMed:15591448}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC191599	0.0	AC191599.4 Medicago truncatula chromosome 2 BAC clone mth2-181i5, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024632431.1	0.0	protein FAR1-RELATED SEQUENCE 11-like
Swissprot	Q9SY66	0.0	FRS11_ARATH; Protein FAR1-RELATED SEQUENCE 11
TrEMBL	A0A2Z6ND45	0.0	A0A2Z6ND45_TRISU; Uncharacterized protein
STRING	XP_004487795.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF594	30	113

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	0.0	FAR1-related sequence 11

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA28655

Publications ? help Back to Top
Joly-Lopez Z, et al. Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements. Front Plant Sci, 2017. 8: p. 2027 [PMID:29250089]