PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28522
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 427aa    MW: 47479.4 Da    PI: 4.9776
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28522genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS335.31.1e-1021284271301
                       GRAS   1 lvelLlecAeavssgdlelaqalLarl.selaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalkl 83 
                                l+e+L++cA+avs+gd e a+ +++++ ++++s +gdp+qRl ay++e+L+arl +s+s +ykal++ e +   s e ++++++
  Tp57577_TGAC_v2_mRNA28522 128 LKEVLITCAQAVSDGDIESASGYMNNVlEKMVSVSGDPIQRLSAYMLEGLRARLESSGSVIYKALKCDEPT---SNELMNYMQI 208
                                5789********************9761566***************************************9...99999***** PP

                       GRAS  84 fsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerL 165
                                +++++P++kf+++  N  I ea+e+e+r+HiiDf+i qG+QW++LlqaL+ Rp+gpp +R+Tg+++++s+  +   ++ +g++L
  Tp57577_TGAC_v2_mRNA28522 209 LYHACPYFKFAYISSNVFICEALENESRIHIIDFQIAQGTQWLSLLQALTRRPGGPPFVRVTGIDDSRSFhaRGGGIHIVGKKL 292
                                ******************************************************************9998888999******** PP

                       GRAS 166 akfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhn 249
                                a++A+++gvpfef+  va   +d++le+L v++gEalaVn+ ++lh+++desvs+e++rd++L+lv slsPkvv +veqe+++n
  Tp57577_TGAC_v2_mRNA28522 293 ADYAKTCGVPFEFHS-VAMFGSDVQLEDLVVRNGEALAVNFPFALHHMPDESVSTENHRDRLLRLVSSLSPKVVLLVEQESNTN 375
                                ***************.79999*************************************************************** PP

                       GRAS 250 sesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvace 301
                                +++F++rf+e+l+yy+a+f+s+++ lpr++++ri+ E+++++r+ivn++ace
  Tp57577_TGAC_v2_mRNA28522 376 TSPFFQRFVETLDYYTAMFESIDVALPRDDKKRISTEQHCVARDIVNIIACE 427
                                ***************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098556.959102427IPR005202Transcription factor GRAS
PfamPF035143.9E-100128427IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 427 aa     Download sequence    Send to blast
MGTSQGQPNS ACINSSSNGS SSQGTNVSYE TNNMEKQFST LESSQASVDF TAFDFDNNMN  60
GSPISDYYRS DNNSFELKKK LKDLEVSLLG PESDIVDSCQ SFSNGSRHKG VSQHNWSKIV  120
EMIPKLDLKE VLITCAQAVS DGDIESASGY MNNVLEKMVS VSGDPIQRLS AYMLEGLRAR  180
LESSGSVIYK ALKCDEPTSN ELMNYMQILY HACPYFKFAY ISSNVFICEA LENESRIHII  240
DFQIAQGTQW LSLLQALTRR PGGPPFVRVT GIDDSRSFHA RGGGIHIVGK KLADYAKTCG  300
VPFEFHSVAM FGSDVQLEDL VVRNGEALAV NFPFALHHMP DESVSTENHR DRLLRLVSSL  360
SPKVVLLVEQ ESNTNTSPFF QRFVETLDYY TAMFESIDVA LPRDDKKRIS TEQHCVARDI  420
VNIIACE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A7e-4713542625305Protein SCARECROW
5b3h_D7e-4713542625305Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28522
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003534887.10.0scarecrow-like protein 13
RefseqXP_014617311.10.0scarecrow-like protein 13
RefseqXP_014617312.10.0scarecrow-like protein 13
RefseqXP_028180835.10.0scarecrow-like protein 13
SwissprotQ9M0M51e-166SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A2K3LHL30.0A0A2K3LHL3_TRIPR; SCARECROW-like protein 13-like
STRINGGLYMA09G01440.20.0(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.11e-154SCARECROW-like 13