PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA28460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | GRAS | ||||||||
Protein Properties | Length: 125aa MW: 14042 Da PI: 9.0933 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 40.6 | 3.9e-13 | 20 | 87 | 31 | 104 |
GRAS 31 aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNqaIle 104 as gd +qRla+yf+ +L+ rl+ ++ +yk+l++ ++ ++ l+a+k++ +sP+ ++s+++ N++Ile Tp57577_TGAC_v2_mRNA28460 20 ASLCGDGLQRLAHYFADGLEVRLSA-GTPMYKQLQSLSS-----ADMLKAYKVYITASPFQRMSNFLSNRTILE 87 8899********************9.8999987776666.....59***************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 13.939 | 1 | 125 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 1.3E-10 | 20 | 87 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
DGKSPSIFCA NSEPSSHYFA SLCGDGLQRL AHYFADGLEV RLSAGTPMYK QLQSLSSADM 60 LKAYKVYITA SPFQRMSNFL SNRTILERPD GPPRLPITGI DLPHPGFRPA ERVEEMGRRL 120 EKYFK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA28460 |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004507177.1 | 4e-47 | scarecrow-like protein 30 | ||||
TrEMBL | A0A2K3JKZ3 | 9e-64 | A0A2K3JKZ3_TRIPR; GRAS family transcription factor (Fragment) | ||||
STRING | XP_004507177.1 | 1e-46 | (Cicer arietinum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G07530.1 | 1e-24 | SCARECROW-like 14 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA28460 |