PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA28420 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | AP2 | ||||||||
Protein Properties | Length: 578aa MW: 65338.6 Da PI: 7.038 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 50.1 | 7e-16 | 305 | 356 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV+++++ grW A+I + +k +lg+f t+eeAa+a++ a+ k++g Tp57577_TGAC_v2_mRNA28420 305 SKYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTEEEAAEAYDIAAIKFRG 356 89****************988532...5************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 4.92E-13 | 167 | 272 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 8.6E-9 | 168 | 190 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 13.973 | 168 | 270 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 5.3E-16 | 168 | 276 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 8.6E-9 | 230 | 271 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 1.5E-6 | 238 | 272 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 2.5E-10 | 305 | 356 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 6.41E-18 | 305 | 365 | IPR016177 | DNA-binding domain |
CDD | cd00018 | 1.16E-25 | 305 | 364 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 2.7E-18 | 306 | 364 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 19.467 | 306 | 364 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.4E-33 | 306 | 370 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000723 | Biological Process | telomere maintenance | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007389 | Biological Process | pattern specification process | ||||
GO:0010073 | Biological Process | meristem maintenance | ||||
GO:0010449 | Biological Process | root meristem growth | ||||
GO:0019827 | Biological Process | stem cell population maintenance | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 578 aa Download sequence Send to blast |
MNNNWLSFPL SPSHPSLPSN DLQATQYHHF PLGLVNEHIE NPFQNHDWNL MNTHSSNEVP 60 KVADFLGVHK SENHSDLVAQ NEIQSNDSDS YLFTNNNNTF MAMQNQVVTT CTNEYQEKVS 120 NSNLQSLTLS MGSGKDSTCE TSGDTSANTL EVAAPKRTSE TFGQRTSIYR GVTKHRWTGR 180 YEAHLWDNSC RREGQSRKGR QEIVYYFKVS VSLIVIFVHL IFCTFCGEIK YKILWFYLMA 240 GGYDKEEKAA KSYDLAALKY WGTSTTTNFP VSNYEKEIDE MKHMTRQEFV ASIRRNSSGF 300 SRGASKYRGV TRHHQHGRWQ ARIGRVAGNK DLYLGTFSTE EEAAEAYDIA AIKFRGLNAV 360 TNFDMTRYDV KAILESNTLP IGGGAAKRLK EAQALETSRK REEMLALNSS SFQYGTTSSS 420 SNNRLQPYPL MHYHHQFEQQ QQLPQPLLTL QNNHENISHD QFSQQQQHHQ GGGYFQTQLE 480 LQQQQNNQTS QYYNGYFQNH PGLFQMNNMG SSSSSSSVMG NNVGGGGSSG IYSNSGGLIG 540 NNGVDEEFVX XXXXXXXXXX XXXXXXXXXX XXXXXNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Master regulator of basal/root fate. Essential for root quiescent center (QC) and columella specification, stem cell activity, as well as for establishment of the stem cell niche during embryogenesis. Modulates the root polar auxin transport by regulating the distribution of PIN genes. Essential role in respecifying pattern and polarity in damaged roots. Direct target of the transcriptional corepressor TPL. Expression levels and patterns regulated post-transcriptionally by root meristem growth factors (RGFs). {ECO:0000250, ECO:0000269|PubMed:15454085, ECO:0000269|PubMed:15635403, ECO:0000269|PubMed:16424342, ECO:0000269|PubMed:20190735}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA28420 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin accumulation. {ECO:0000269|PubMed:15454085}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003606758.2 | 0.0 | AP2-like ethylene-responsive transcription factor PLT2 | ||||
Swissprot | Q5YGP7 | 0.0 | PLET2_ARATH; AP2-like ethylene-responsive transcription factor PLT2 | ||||
TrEMBL | A0A2K3PA74 | 0.0 | A0A2K3PA74_TRIPR; Ap2-like ethylene-responsive transcription factor plt2-like protein | ||||
STRING | AES88955 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4942 | 31 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G51190.1 | 1e-165 | AP2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA28420 |