PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA28352 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 110aa MW: 12843.9 Da PI: 10.1324 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 72.3 | 6.5e-23 | 4 | 64 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKY + e+ ++prsYYrC++ C++kkkv++ +++p+v+e+tY+g H ++ Tp57577_TGAC_v2_mRNA28352 4 KDGFTWRKYVKQEILRVKYPRSYYRCSHMkldACRAKKKVQQLRDNPNVFEVTYNGAHSCR 64 7***************************98889*************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-21 | 2 | 64 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.11E-19 | 3 | 64 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.9E-23 | 3 | 65 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.4E-21 | 4 | 64 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 16.111 | 5 | 66 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 110 aa Download sequence Send to blast |
MPRKDGFTWR KYVKQEILRV KYPRSYYRCS HMKLDACRAK KKVQQLRDNP NVFEVTYNGA 60 HSCRISLTIP SLFLAAQRIS KDMTPTTMPA PTSYLEWLSQ EKEDDVKVI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 3e-14 | 5 | 64 | 10 | 69 | OsWRKY45 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA28352 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615896.2 | 2e-33 | uncharacterized protein LOC11409580 | ||||
TrEMBL | A0A2K3JNZ8 | 3e-40 | A0A2K3JNZ8_TRIPR; WRKY transcription factor 55-like protein (Fragment) | ||||
STRING | XP_009363895.1 | 1e-27 | (Pyrus x bretschneideri) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF8629 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 5e-23 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA28352 |