PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28349
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 1009aa    MW: 116612 Da    PI: 7.3483
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28349genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY52.87.7e-17667726258
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                                dDg++W+KY  Ke+ + ++prsYY C +    +   kkkv++ +++p+++e+tY+g H +
  Tp57577_TGAC_v2_mRNA28349 667 DDGFTWKKYKEKEMLDFKYPRSYYMCNHMtkySGGFKKKVQQLDDNPNMFEVTYKGGHSC 726
                                8*************************9987778899**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF747881.46E-72240577IPR016159Cullin repeat-like-containing domain
PfamPF030811.2E-64345574IPR004140Exocyst complex protein Exo70
Gene3DG3DSA:2.20.25.801.4E-15663726IPR003657WRKY domain
SuperFamilySSF1182902.62E-15664727IPR003657WRKY domain
SMARTSM007742.7E-18666728IPR003657WRKY domain
PROSITE profilePS5081114.332667725IPR003657WRKY domain
PfamPF031068.8E-15667726IPR003657WRKY domain
PfamPF030812.2E-45784998IPR004140Exocyst complex protein Exo70
SuperFamilySSF747881.57E-387861001IPR016159Cullin repeat-like-containing domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006887Biological Processexocytosis
GO:0000145Cellular Componentexocyst
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1009 aa     Download sequence    Send to blast
MTHILIQIWR WLMQPKVWRF IGFASAVVGL VCYALSSSFN YLFGDWNFLK LFLYIIFSFI  60
ICFVILFAKL LQHSSSLRFK AHTAFLVLTI TSVYSFFFDK VMNGKPDAYS LISCAAFAIM  120
SLSLSRQTQC GFEIDLLYFF LGCLIVQLMK IKLQLFILGA GFSYSLIILR SFFSSIDARG  180
DDQYSQLQDE NSVVLYMNSL QLANIDIASD SNRIDSSQLM IANDISSVME QLMAFVKALQ  240
HESVIIIQMI FVHVEKYYAK KQSQFVFNDP NFMMDAFKLE TIKGLEKTAK VMVCSGFGKD  300
FSIVYNSCRR ECLDKCLNRL FSLEKYNIQD VHNIPWKELE DNIESWIRAS NVALKMLFPG  360
ERQLCNRIFF GFSSVADFSF LDICKGWTIQ LVTFVNAIAT RSHSPERLFK ILEVFQTLCD  420
LIPEFESLFC DQYSVSLINE AMTIWKRLKE SIKGIFMELQ YLIGKDPVNV TVNGGGLHPI  480
TQYVMNYLSV VCQSRQTLEQ VFEDSSFSQT IHRIMDILES NLEMKSKCYD DPSIGYIFLM  540
NNNTYIVQVT KDNELGTILG YDWLQKHALK VWHYYGREVQ QSSNKTRHYD SREVLQSLYN  600
ARQIGKIDRS NVEGSEGSKG YERDVQLIEA SLTQLERIGT KDSETEIRTI VISPSQQFGM  660
AHKMSPDDGF TWKKYKEKEM LDFKYPRSYY MCNHMTKYSG GFKKKVQQLD DNPNMFEVTY  720
KGGHSCCMSL TKASLILPPR KIRNTSNSKD IITQTTMPPS STSYSRWLSS ATPVKSISSI  780
PEVNLPAPAN GGHHPMMYNV ADYLVSTIRS QKVKFVNADR AFSTQTEEPM KLLESILEWK  840
SKNYADTSLR HFFMMNNWRY LEVAIQRREL NEIFGNIWCQ KFRVKVQQKL ELYQRNSWEK  900
VLDFLKLDIN DSSVEINLAV DSMKENLSCF NMHLAETLRI QCTWSVHDEK LRGEIISSLK  960
NILLPVYGTF IGKFQNFLKN DAYEYIEYGI FDIEDVLDSL FLGNKTDE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rl5_A6e-512851008137562Exocyst complex component EXO70A1
4rl5_B6e-512851008137562Exocyst complex component EXO70A1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of an exocyst subcomplex specifically involved in autophagy-related, Golgi-independent membrane traffic to the vacuole. Regulates autophagosome formation and autophagy-related Golgi-independent import into the vacuole. Positive regulator of both abscisic acid (ABA)-promoted and mannitol (drought)-promoted stomatal closure (PubMed:27956469). {ECO:0000269|PubMed:23944713, ECO:0000269|PubMed:27956469}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28349
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615896.20.0uncharacterized protein LOC11409580
SwissprotQ9FGH91e-112E70B1_ARATH; Exocyst complex component EXO70B1
TrEMBLA0A2K3P6S00.0A0A2K3P6S0_TRIPR; Exocyst subunit Exo70 family protein
STRINGXP_004490668.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF174145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-18WRKY DNA-binding protein 55
Publications ? help Back to Top
  1. Synek L, et al.
    AtEXO70A1, a member of a family of putative exocyst subunits specifically expanded in land plants, is important for polar growth and plant development.
    Plant J., 2006. 48(1): p. 54-72
    [PMID:16942608]
  2. Li S, et al.
    Expression and functional analyses of EXO70 genes in Arabidopsis implicate their roles in regulating cell type-specific exocytosis.
    Plant Physiol., 2010. 154(4): p. 1819-30
    [PMID:20943851]
  3. Wang J, et al.
    EXPO, an exocyst-positive organelle distinct from multivesicular endosomes and autophagosomes, mediates cytosol to cell wall exocytosis in Arabidopsis and tobacco cells.
    Plant Cell, 2010. 22(12): p. 4009-30
    [PMID:21193573]
  4. Kulich I, et al.
    Arabidopsis exocyst subcomplex containing subunit EXO70B1 is involved in autophagy-related transport to the vacuole.
    Traffic, 2013. 14(11): p. 1155-65
    [PMID:23944713]
  5. Stegmann M, et al.
    The exocyst subunit Exo70B1 is involved in the immune response of Arabidopsis thaliana to different pathogens and cell death.
    Plant Signal Behav, 2013. 8(12): p. e27421
    [PMID:24389869]
  6. Tzfadia O,Galili G
    The Arabidopsis exocyst subcomplex subunits involved in a golgi-independent transport into the vacuole possess consensus autophagy-associated atg8 interacting motifs.
    Plant Signal Behav, 2013. 8(10): p. doi: 10.4161/psb.26732
    [PMID:24494242]
  7. Zhao T, et al.
    A truncated NLR protein, TIR-NBS2, is required for activated defense responses in the exo70B1 mutant.
    PLoS Genet., 2015. 11(1): p. e1004945
    [PMID:25617755]
  8. Hong D,Jeon BW,Kim SY,Hwang JU,Lee Y
    The ROP2-RIC7 pathway negatively regulates light-induced stomatal opening by inhibiting exocyst subunit Exo70B1 in Arabidopsis.
    New Phytol., 2016. 209(2): p. 624-35
    [PMID:26451971]
  9. Seo DH,Ahn MY,Park KY,Kim EY,Kim WT
    The N-Terminal UND Motif of the Arabidopsis U-Box E3 Ligase PUB18 Is Critical for the Negative Regulation of ABA-Mediated Stomatal Movement and Determines Its Ubiquitination Specificity for Exocyst Subunit Exo70B1.
    Plant Cell, 2016. 28(12): p. 2952-2973
    [PMID:27956469]
  10. Sabol P,Kulich I,Žárský V
    RIN4 recruits the exocyst subunit EXO70B1 to the plasma membrane.
    J. Exp. Bot., 2017. 68(12): p. 3253-3265
    [PMID:28338727]
  11. Liu N, et al.
    CALCIUM-DEPENDENT PROTEIN KINASE5 Associates with the Truncated NLR Protein TIR-NBS2 to Contribute to exo70B1-Mediated Immunity.
    Plant Cell, 2017. 29(4): p. 746-759
    [PMID:28351987]