PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28348
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 779aa    MW: 88795.8 Da    PI: 7.1187
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28348genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY75.37.7e-24619679259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                +Dg+ W+KYG+Ke+ + ++prsYYrC++     C++kkkv++  ++p+v+e+tY+g H ++
  Tp57577_TGAC_v2_mRNA28348 619 KDGFIWKKYGKKEIPDVKYPRSYYRCSHMnldACQAKKKVQQLGDNPNVFEVTYNGAHSCR 679
                                7***************************98889*************************996 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF747888.37E-51255546IPR016159Cullin repeat-like-containing domain
PfamPF030819.9E-38373546IPR004140Exocyst complex protein Exo70
Gene3DG3DSA:2.20.25.807.7E-23613679IPR003657WRKY domain
SuperFamilySSF1182903.27E-21614680IPR003657WRKY domain
SMARTSM007742.7E-29618680IPR003657WRKY domain
PfamPF031061.3E-21619679IPR003657WRKY domain
PROSITE profilePS5081117.086620681IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006887Biological Processexocytosis
GO:0000145Cellular Componentexocyst
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 779 aa     Download sequence    Send to blast
MDGLNSQSQS HTVRKQFLYT VDNMMHILNQ IGRWLMQPNL WRFIGFASAV VGLLCYALSS  60
SFNYLFGEWN LLKIFLYSVF SFIICLVILF AKLFQHSRSL RFKAHTAFLV LTITSVYSFF  120
FDKVMNGKPD AYSLISCAAF SIMSLSLSRQ TQCGFEIDLL YFFLGCLIVQ LMKIKLQLFI  180
LGAGFSYSLI ILRSFFSSID ARGHNQYSQF QDGNSVILHI DSLQLANTIT DIACARSRNN  240
IDSPPLVITT DISSVMEQLW TFVKALQQEN LNLIQMVLDH VKNYCEQHSP LVATDPNFMM  300
DALKPETIKG LEETAKVMVS AGFEKDFSDV YNSCRRECLD KCLMHRLFML KKLSSEDIHD  360
MPWMDLEDEI KIWIRAFNVT LKILFPGERQ LCDRVFSGFA SAADFSFIEI CRESIVQLLN  420
FADSIAAGSH SPECLFNIIE VFETLRDLIP EFESLFCDQY SVSLKNEAIT IWKKLGKAIR  480
SIFMELEYLL DQNLTTGTYL SSVLHPITQH VVNYLRVVSQ SRKTLEQVFD DSSLSGKIIN  540
IMDILEMQDF FPLLYIKQQI KGVRRIEGSK AYEGNVQEIE ALLSQLPKSR KMEPEIEIRT  600
IVLISPAPHV ESIEKMPPKD GFIWKKYGKK EIPDVKYPRS YYRCSHMNLD ACQAKKKVQQ  660
LGDNPNVFEV TYNGAHSCRM SLTIPSLFLP ARRISKDMTQ TTMPASTSYS EWLSSGTPAK  720
YINSIPTANL AAPEDGGHHP MMDNVGDYLV SAIRSQQIVS AIRSQQIYAH QRNSANER*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rl5_A4e-37311546137378Exocyst complex component EXO70A1
4rl5_B4e-37311546137378Exocyst complex component EXO70A1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28348
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003615896.20.0uncharacterized protein LOC11409580
TrEMBLG7JZS80.0G7JZS8_MEDTR; Exocyst subunit exo70 family protein
STRINGAES988540.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF174145
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.13e-22WRKY DNA-binding protein 55