PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA28348 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 779aa MW: 88795.8 Da PI: 7.1187 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 75.3 | 7.7e-24 | 619 | 679 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg+ W+KYG+Ke+ + ++prsYYrC++ C++kkkv++ ++p+v+e+tY+g H ++ Tp57577_TGAC_v2_mRNA28348 619 KDGFIWKKYGKKEIPDVKYPRSYYRCSHMnldACQAKKKVQQLGDNPNVFEVTYNGAHSCR 679 7***************************98889*************************996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF74788 | 8.37E-51 | 255 | 546 | IPR016159 | Cullin repeat-like-containing domain |
Pfam | PF03081 | 9.9E-38 | 373 | 546 | IPR004140 | Exocyst complex protein Exo70 |
Gene3D | G3DSA:2.20.25.80 | 7.7E-23 | 613 | 679 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.27E-21 | 614 | 680 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-29 | 618 | 680 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.3E-21 | 619 | 679 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 17.086 | 620 | 681 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006887 | Biological Process | exocytosis | ||||
GO:0000145 | Cellular Component | exocyst | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 779 aa Download sequence Send to blast |
MDGLNSQSQS HTVRKQFLYT VDNMMHILNQ IGRWLMQPNL WRFIGFASAV VGLLCYALSS 60 SFNYLFGEWN LLKIFLYSVF SFIICLVILF AKLFQHSRSL RFKAHTAFLV LTITSVYSFF 120 FDKVMNGKPD AYSLISCAAF SIMSLSLSRQ TQCGFEIDLL YFFLGCLIVQ LMKIKLQLFI 180 LGAGFSYSLI ILRSFFSSID ARGHNQYSQF QDGNSVILHI DSLQLANTIT DIACARSRNN 240 IDSPPLVITT DISSVMEQLW TFVKALQQEN LNLIQMVLDH VKNYCEQHSP LVATDPNFMM 300 DALKPETIKG LEETAKVMVS AGFEKDFSDV YNSCRRECLD KCLMHRLFML KKLSSEDIHD 360 MPWMDLEDEI KIWIRAFNVT LKILFPGERQ LCDRVFSGFA SAADFSFIEI CRESIVQLLN 420 FADSIAAGSH SPECLFNIIE VFETLRDLIP EFESLFCDQY SVSLKNEAIT IWKKLGKAIR 480 SIFMELEYLL DQNLTTGTYL SSVLHPITQH VVNYLRVVSQ SRKTLEQVFD DSSLSGKIIN 540 IMDILEMQDF FPLLYIKQQI KGVRRIEGSK AYEGNVQEIE ALLSQLPKSR KMEPEIEIRT 600 IVLISPAPHV ESIEKMPPKD GFIWKKYGKK EIPDVKYPRS YYRCSHMNLD ACQAKKKVQQ 660 LGDNPNVFEV TYNGAHSCRM SLTIPSLFLP ARRISKDMTQ TTMPASTSYS EWLSSGTPAK 720 YINSIPTANL AAPEDGGHHP MMDNVGDYLV SAIRSQQIVS AIRSQQIYAH QRNSANER* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4rl5_A | 4e-37 | 311 | 546 | 137 | 378 | Exocyst complex component EXO70A1 |
4rl5_B | 4e-37 | 311 | 546 | 137 | 378 | Exocyst complex component EXO70A1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA28348 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615896.2 | 0.0 | uncharacterized protein LOC11409580 | ||||
TrEMBL | G7JZS8 | 0.0 | G7JZS8_MEDTR; Exocyst subunit exo70 family protein | ||||
STRING | AES98854 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1741 | 4 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40740.1 | 3e-22 | WRKY DNA-binding protein 55 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA28348 |