PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA28322

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

M-type_MADS

Protein Properties

Length: 462aa MW: 51628.6 Da PI: 4.6793

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA28322	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	23.6	6.7e-08	53	99	6	44
HHHHHHHHHHHHH........HHHHHHHHHHHHHT-EEEEEEE-TTS CS SRF-TF 6 ksnrqvtfskRrn........gilKKAeELSvLCdaevaviifsstg 44 + +r tf kR+n gi+KK +E+ +LC++e++ ii+ +++ Tp57577_TGAC_v2_mRNA28322 53 SLKRRDTFRKRKNcyyiffpiGIMKKLNEMTTLCGIEACGIIYDNNN 99 6678889999998888888889********************98776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50066	10.596	40	99	IPR002100	Transcription factor, MADS-box
SMART	SM00432	1.0E-11	40	107	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	6.67E-17	42	142	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.25E-22	42	132	No hit	No description
Pfam	PF00319	1.6E-5	53	99	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MSAENCASSV NGGQATPQNK GYQNDTLNPY FMHPNENPAM PRQKIKIAYI TCSLKRRDTF 60 RKRKNCYYIF FPIGIMKKLN EMTTLCGIEA CGIIYDNNNP HAEVWPSDSG VKNVLSRFGS 120 FSELQRSKKL MDQSDYLRQN IHKAYEKLKK LIEENRKKEM INVIDHYIHT NEFTGNLMTK 180 YDVNDFTSLI DENLQEIYRK MNELQIEAWG QVGNRGEVMN GTMQHENIGH VQGLLNGCDL 240 EANMNNATGH DLEANYMGND VGHVRGLLNG SDLEVMDNAP VYDLEANYMG NNVVGHVQVQ 300 GLLNGSDLEA NMYNAVGHNL EANYMGNAVG HVHELLNGCD LEANMDNAAG HDLEANYMGN 360 AVGHVHGLLN GCDLEANMDN IAGHDLEANY MGNDVGHVQG LNGRDLEANM GNVADVQGLE 420 ANMNYDMESE IEHLLWNFSM LPFYDINEDT SIFGQTGPYH P*

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MSAENCASSV NGGQATPQNK GYQNDTLNPY FMHPNENPAM PRQKIKIAYI TCSLKRRDTF  60
RKRKNCYYIF FPIGIMKKLN EMTTLCGIEA CGIIYDNNNP HAEVWPSDSG VKNVLSRFGS  120
FSELQRSKKL MDQSDYLRQN IHKAYEKLKK LIEENRKKEM INVIDHYIHT NEFTGNLMTK  180
YDVNDFTSLI DENLQEIYRK MNELQIEAWG QVGNRGEVMN GTMQHENIGH VQGLLNGCDL  240
EANMNNATGH DLEANYMGND VGHVRGLLNG SDLEVMDNAP VYDLEANYMG NNVVGHVQVQ  300
GLLNGSDLEA NMYNAVGHNL EANYMGNAVG HVHELLNGCD LEANMDNAAG HDLEANYMGN  360
AVGHVHGLLN GCDLEANMDN IAGHDLEANY MGNDVGHVQG LNGRDLEANM GNVADVQGLE  420
ANMNYDMESE IEHLLWNFSM LPFYDINEDT SIFGQTGPYH P*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA28322

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
TrEMBL	A0A2K3LXM9	0.0	A0A2K3LXM9_TRIPR; Agamous-like mads-box protein agl80-like (Fragment)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16291	3	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G65330.1	3e-27	M-type_MADS family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA28322