PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2831
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 348aa    MW: 39847.2 Da    PI: 5.1923
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2831genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.2e-12145196155
                               CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                               +r++h  +Er+RR+++N+ ++ Lr+l+P++   + ++ + a+i   A++++k+L+
  Tp57577_TGAC_v2_mRNA2831 145 QRMTHITVERNRRKQMNEYLAVLRSLMPES---YIQRGDQASIIGGAINFVKELE 196
                               79****************************...9******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.30E-12143198No hitNo description
Gene3DG3DSA:4.10.280.105.1E-13143199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-14144208IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.173144195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000109.9E-10145196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-6150201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS516718.895273347IPR002912ACT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008152Biological Processmetabolic process
GO:0016597Molecular Functionamino acid binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MCLPEEERDR VKDMALEAVV YPQTQDPFGF GINKDFYNFN FNNLVAKEQE HEHEHEQEQE  60
QEQEQEQRSF CFVENQTEKN NYPYYGDWNN NTFSPPHFNE LQETNTDPSS NNTQNFDTSP  120
SINTFVRPKR RRARSRKNKE EIESQRMTHI TVERNRRKQM NEYLAVLRSL MPESYIQRGD  180
QASIIGGAIN FVKELEHKFH LLGAKKEEEV TSDDVGGSNK PFSEFFTFPQ YSTSSSGVCG  240
SSSNSAATIG EKVGEIQSCI ADIEVTMVES HANIKIRSKK RPKQLLKIVS SLHNMHLTIL  300
HLNVTTTGEI VLYSLSVKVE DDCNLGSVDD IAAAIYQMVN RIQQEQC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1145156RMTHITVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2831
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1409600.0BT140960.1 Medicago truncatula clone JCVI-FLMt-14D16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003591068.20.0transcription factor bHLH94
TrEMBLA0A2K3LHS80.0A0A2K3LHS8_TRIPR; Transcription factor bHLH96-like protein
STRINGAES613191e-174(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.11e-74bHLH family protein