PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA28172 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 147aa MW: 15867.1 Da PI: 9.1149 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 119.6 | 1.8e-37 | 22 | 116 | 1 | 94 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+++C++apyf+ eq + +fa++hk+FGasnv+k+l ++p ++r++a+ +++yeA+ar+ dPvyG+v++i++l Tp57577_TGAC_v2_mRNA28172 22 PCGACKFLRRKCTSECIFAPYFCCEQgSIRFAAIHKVFGASNVSKMLLNIPAHDRPEAVVTIAYEAQARIIDPVYGCVSHIFAL 105 7*********************9999789******************************************************* PP DUF260 84 qqqleqlkael 94 qqq++ + +l Tp57577_TGAC_v2_mRNA28172 106 QQQVHFQSYNL 116 ****9877666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 21.412 | 21 | 123 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.7E-36 | 22 | 116 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MASANGSGSG SGSGSGSGSG SPCGACKFLR RKCTSECIFA PYFCCEQGSI RFAAIHKVFG 60 ASNVSKMLLN IPAHDRPEAV VTIAYEAQAR IIDPVYGCVS HIFALQQQVH FQSYNLQFNT 120 SYRTFINTIR NSFLGHSKSK STLLIKD |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-37 | 12 | 110 | 1 | 98 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-37 | 12 | 110 | 1 | 98 | LOB family transfactor Ramosa2.1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator (PubMed:19717544, PubMed:22974309). Involved in lateral root formation. Regulated by the transcriptional activators ARF7 and ARF19 (PubMed:17259263). Functions in the initiation and emergence of lateral roots, in conjunction with LBD18, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA28172 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:17259263, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_019441931.1 | 9e-59 | PREDICTED: LOB domain-containing protein 16-like | ||||
Swissprot | Q9SLB7 | 7e-57 | LBD16_ARATH; LOB domain-containing protein 16 | ||||
TrEMBL | A0A2K3LJG5 | 1e-74 | A0A2K3LJG5_TRIPR; LOB domain-containing protein 16-like | ||||
STRING | XP_004493763.1 | 2e-56 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G42430.1 | 3e-54 | lateral organ boundaries-domain 16 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA28172 |