PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA28042
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 166aa    MW: 18584.3 Da    PI: 9.9151
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA28042genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH361.3e-1192134855
                                HHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   8 rErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                + +rRR+riN+++  L++l+P+      +K++ +++Le+Av+Y+k Lq
  Tp57577_TGAC_v2_mRNA28042  92 VMQRRRERINERLRILQTLVPNG-----TKVDISTMLEEAVQYVKFLQ 134
                                679******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.11984133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.0E-990139IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.106.9E-1393148IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-894134IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.11E-1094138No hitNo description
SuperFamilySSF474591.57E-1394151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 166 aa     Download sequence    Send to blast
MRNVKRCPNS ASMSNNEESL MWHGSKNCFS QVDSSNASIE LNRGTSPSLS PREPKAPNLY  60
KKSKATSGLA TDAQSIYARL NISLMKGFSS CVMQRRRERI NERLRILQTL VPNGTKVDIS  120
TMLEEAVQYV KFLQLQIKLL SSEDMWMYAP IAYNGINIGL DLSFN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA28042
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592481.15e-71transcription factor bHLH84
SwissprotQ7XHI92e-46BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A2K3NBC49e-90A0A2K3NBC4_TRIPR; Transcription factor bHLH84-like protein
STRINGAES627322e-70(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80733121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.31e-37bHLH family protein