PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA28002

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

LBD

Protein Properties

Length: 117aa MW: 13200.6 Da PI: 8.6259

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA28002	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	98.4	7.4e-31	2	97	1	91
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C++C+vlr++C++dC+l+ ++ p++q++++ +v k+FG++++l++l+++p+++r+++++sl+yeA r+ +Pv+Gavg+++ Tp57577_TGAC_v2_mRNA28002 2 SCNGCRVLRKGCSEDCMLRDCLtwiqnPQAQANATVFVTKFFGRATLLSFLSSVPPNQRPAMFQSLMYEAVGRTINPVNGAVGMLW 87 6*********************************************************************************** PP DUF260 82 klqqqleqlk 91 ++++q +q Tp57577_TGAC_v2_mRNA28002 88 TGKWQFCQXX 97 *****976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	17.531	1	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	2.1E-27	2	97	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 117 aa Download sequence Send to blast
MSCNGCRVLR KGCSEDCMLR DCLTWIQNPQ AQANATVFVT KFFGRATLLS FLSSVPPNQR 60 PAMFQSLMYE AVGRTINPVN GAVGMLWTGK WQFCQXXXXX XXXXXXXXXX XXXXEW*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA28002

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003592478.1	3e-61	LOB domain-containing protein 38
Swissprot	Q9FN11	1e-48	LBD37_ARATH; LOB domain-containing protein 37
TrEMBL	G7IE59	7e-60	G7IE59_MEDTR; LOB domain protein
STRING	AES62729	1e-60	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF721	34	136

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G67420.1	4e-51	LOB domain-containing protein 37

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA28002

Publications ? help Back to Top
Menz J,Li Z,Schulze WX,Ludewig U Early nitrogen-deprivation responses in Arabidopsis roots reveal distinct differences on transcriptome and (phospho-) proteome levels between nitrate and ammonium nutrition. Plant J., 2016. 88(5): p. 717-734 [PMID:27419465]