PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27971
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 341aa    MW: 38115.9 Da    PI: 6.1915
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27971genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.82.1e-28185245259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                +Dg++WrKYGqKe+ g ++prsYYrCt++    Cp+kk+v+r +++p++ve+tY+geH ++
  Tp57577_TGAC_v2_mRNA27971 185 EDGFTWRKYGQKEILGRKYPRSYYRCTHQklyLCPAKKQVQRLDNNPNIVEVTYRGEHICH 245
                                7****************************8888*************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.803.0E-27179245IPR003657WRKY domain
SuperFamilySSF1182902.22E-24181245IPR003657WRKY domain
SMARTSM007748.6E-36184246IPR003657WRKY domain
PROSITE profilePS5081120.415185242IPR003657WRKY domain
PfamPF031061.5E-25185245IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 341 aa     Download sequence    Send to blast
MEEVMNFIMR AFELAKDHEQ ELPNIANNPE MLFSSIDEVE KAFSSAKERL MMMLSSQHDT  60
TTTTTTTKGS NSFAQILSHD VFMQNNHDHH GQMGGSGNSM HAHSMNQLLL MQHSFEMLRS  120
RGTLMIGEMG GRDVEGLEIS KGLEGEMQGI EESPSRPKKS RKNDMEKRTE MFPAPQIGNT  180
EMPPEDGFTW RKYGQKEILG RKYPRSYYRC THQKLYLCPA KKQVQRLDNN PNIVEVTYRG  240
EHICHKSLTA PSSYPPPPNL LVNINTTQAT IPPEAWPPAV NLGLRGGNSS GGPSTSRFGI  300
DYPVADMADA MFNSGSSSGN SMESLFHPSD DKWEPDEKIN *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-19185244968OsWRKY45
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00304DAPTransfer from AT2G40740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27971
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639722.10.0WRKY transcription factor 55 isoform X2
TrEMBLG7K6410.0G7K641_MEDTR; WRKY family transcription factor
STRINGAES983710.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF86293142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40740.14e-51WRKY DNA-binding protein 55