PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27916
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 697aa    MW: 77281.4 Da    PI: 6.2105
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27916genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS314.13e-963216962374
                       GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfs 85 
                                ++lL+e+A+a+s+g++e a+++L+r+ ++ +p  ++ +Rl  +++ AL++r+++    + +  p+ e     s+e++ +++l++
  Tp57577_TGAC_v2_mRNA27916 321 KQLLMEAATAISEGKMESASEILNRMAQNPNPIMNSDRRLMDCMVSALKSRVNH----VENPPPVVELF---SKEHAESTQLLF 397
                                689**************************************************9....55555555555...99999******* PP

                       GRAS  86 evsPilkfshltaNqaIleavege...............ervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg 153
                                + s ++k+s+++aN aIlea+ +e                ++ ++Dfdi++G Q++aLl++L +R +g+p +l+iT+v++  ++
  Tp57577_TGAC_v2_mRNA27916 398 DHSLCFKVSFMAANIAILEAAFEEttekdnnnnnnnnnvMKLCVVDFDIGHGKQYMALLNELHARLNGSPaTLKITAVAE--ND 479
                                *******************97554456667777777666667************************77776*********..56 PP

                       GRAS 154 skeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPk 237
                                ++e l+ +ge+L + Ae+l++ fe +v v+++l++l+ e+L +++++ laVn++++l+r++desvs+e++rd++L+ vksl P+
  Tp57577_TGAC_v2_mRNA27916 480 DEEWLKIVGENLGRQAERLRIGFELKV-VTQKLAELTRESLGCDSEDILAVNFAFKLFRMPDESVSTENPRDALLRSVKSLAPR 562
                                **************************9.799***************************************************** PP

                       GRAS 238 vvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerlee 321
                                vv+v eqe+++n+++F++r++e+++yy alfdsle+++++e++er+k+E+  l+++++n+v ceg++r+er+e ++kWr+r+++
  Tp57577_TGAC_v2_mRNA27916 563 VVIVLEQEINTNTAPFVARVAESCSYYGALFDSLESTMGKENSERVKIEEG-LSQKLCNAVGCEGRDRVERCEVFGKWRARMSM 645
                                ***************************************************.******************************** PP

                       GRAS 322 aGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                                aGF+  p+s+k+a+++k+ l+  + +  +v+ee+g +++gW++r+L+++SaWr
  Tp57577_TGAC_v2_mRNA27916 646 AGFRLNPVSQKVAESIKARLAPGS-R-VTVNEENGGVCFGWMGRTLTVASAWR 696
                                ******************998877.4.89***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098540.699294678IPR005202Transcription factor GRAS
PfamPF035141.1E-93321696IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 697 aa     Download sequence    Send to blast
MSSPGFPGSG GSSDFYGGAA SFSGRSITLP SSNMSNMNNN NIINNNNNNY LSNIATNTHN  60
LHQPFYRTQQ QHLPSIFIDP SSQIQQHQTS SLIGKRTLAE FQTQNINNIN NITNNNNLNL  120
HNFNNNNLNH NLNHHNNNNN NTVLSNLLLR SVKPRNFQHG SPMSPLSPID FTNSSPELIN  180
PSSFSSPRLG LPLRSISNPI VQNPLPMNNS ILQNTNYLYQ NSNFSQIQNR VISTSHDPPK  240
KMMDHRFLEL EKQLLEDNDE EGEQDAVSGI TNSEWSETIQ NLISFEKNTT QKPDSYSPTS  300
STTSLNSCSS SVVSPASGCS KQLLMEAATA ISEGKMESAS EILNRMAQNP NPIMNSDRRL  360
MDCMVSALKS RVNHVENPPP VVELFSKEHA ESTQLLFDHS LCFKVSFMAA NIAILEAAFE  420
ETTEKDNNNN NNNNNVMKLC VVDFDIGHGK QYMALLNELH ARLNGSPATL KITAVAENDD  480
EEWLKIVGEN LGRQAERLRI GFELKVVTQK LAELTRESLG CDSEDILAVN FAFKLFRMPD  540
ESVSTENPRD ALLRSVKSLA PRVVIVLEQE INTNTAPFVA RVAESCSYYG ALFDSLESTM  600
GKENSERVKI EEGLSQKLCN AVGCEGRDRV ERCEVFGKWR ARMSMAGFRL NPVSQKVAES  660
IKARLAPGSR VTVNEENGGV CFGWMGRTLT VASAWR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A3e-2635969642375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27916
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM4110405e-65AM411040.1 Trifolium pratense AFLP fragment rc0113.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004496533.10.0scarecrow-like protein 8
SwissprotQ9FYR71e-148SCL8_ARATH; Scarecrow-like protein 8
TrEMBLA0A2Z6N6E60.0A0A2Z6N6E6_TRISU; Uncharacterized protein
STRINGXP_004496533.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-140SCARECROW-like 8