PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2787
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bZIP
Protein Properties Length: 194aa    MW: 21621.2 Da    PI: 7.086
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2787genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_1279.6e-0983127650
                               HHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
                    bZIP_1   6 rerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkele 50 
                               r +r   NReA +++R++Kka+++ Lee+vk+L+  N++L  +l+
  Tp57577_TGAC_v2_mRNA2787  83 RPKRTSGNREAVKKYREKKKAQTAYLEEEVKKLKMLNQQLLRKLQ 127
                               6688899*********************************99987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1703.0E-1376146No hitNo description
SMARTSM003382.2E-477145IPR004827Basic-leucine zipper domain
PfamPF077161.0E-1280127IPR004827Basic-leucine zipper domain
PROSITE profilePS502178.56580127IPR004827Basic-leucine zipper domain
SuperFamilySSF579596.0E-684127No hitNo description
CDDcd146869.88E-1090127No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 194 aa     Download sequence    Send to blast
MDDVSSEVSD KLSDNLFSNP ESCSNFQAST SLNTVTELSK NTTKTCTHTH TCNPPGPDEA  60
IHTHTCFHTH TQVFASEDDT NSRPKRTSGN REAVKKYREK KKAQTAYLEE EVKKLKMLNQ  120
QLLRKLQGQA LLEAELLRLR KVFVQLKGKI DSELGSFPFQ KQCFSSSVYK GDANLVSTSQ  180
PVDLELCSTE TSD*
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor involved in the regulation of salt stress response. Functions as a negative transcriptional regulator of salt stress acclimation response by regulating cation homeostasis (PubMed:18703123, PubMed:19248824). Regulates negatively the expression of genes contributing to ion and osmotic homeostasis during salt stress, such as the Na(+) transporter HKT1, the Na(+)/H(+) antiporter SOS1, the aquaporin PIP2-1 and the glutamine synthetase GLN1-3. In addition, targets genes with functions in plant growth and development, such as argonaute 4 (AGO4) and cyclophilin 19 (CYP19) (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2787
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salt stress (PubMed:18703123, PubMed:19248824). Induced by osmotic stress (PubMed:19248824). {ECO:0000269|PubMed:18703123, ECO:0000269|PubMed:19248824}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF6915491e-38EF691549.1 Trifolium repens clone CloverSSR-6_F09_035_1 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_007149027.12e-82hypothetical protein PHAVU_005G034400g
RefseqXP_007149028.12e-82hypothetical protein PHAVU_005G034400g
SwissprotQ8GTS12e-51BZP24_ARATH; Basic leucine zipper 24
TrEMBLA0A2K3PMN81e-139A0A2K3PMN8_TRIPR; Basic leucine zipper 24 transcription factor
STRINGXP_007149027.19e-82(Phaseolus vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G51960.26e-34basic leucine zipper 24