PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA27852 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 207aa MW: 22099.2 Da PI: 8.804 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 112.4 | 3.1e-35 | 24 | 111 | 1 | 87 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilkl 83 +C aCk+lrrkC+++C++apyf +e+ + +fa+vhk+FGasnv+kll +p ++r da+ sl+yeA+ar+rdP+yG+vg+i++l Tp57577_TGAC_v2_mRNA27852 24 PCGACKFLRRKCVSGCIFAPYFDSEHgTTHFAAVHKVFGASNVSKLLLGIPINRRLDAAVSLCYEAQARLRDPIYGCVGHIFAL 107 7*********************999979******************************************************** PP DUF260 84 qqql 87 qqq Tp57577_TGAC_v2_mRNA27852 108 QQQC 111 **97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.676 | 23 | 124 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-35 | 24 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 207 aa Download sequence Send to blast |
MSLNSSGSGS NGGGSGSGGN SSSPCGACKF LRRKCVSGCI FAPYFDSEHG TTHFAAVHKV 60 FGASNVSKLL LGIPINRRLD AAVSLCYEAQ ARLRDPIYGC VGHIFALQQQ CFCGIQKRNK 120 KEGLGKDEKK KVLSLQAELS YMQSHINSSE LTQPPLPPPQ AAVAPAVFSF ADLPPPXXXX 180 FIGYATPEAQ YRPTSIFTCS WPNINH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 7e-33 | 21 | 110 | 8 | 96 | LOB family transfactor Ramosa2.1 |
5ly0_B | 7e-33 | 21 | 110 | 8 | 96 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the positive regulation of tracheary element (TE) differentiation. Involved in a positive feedback loop that maintains or promotes NAC030/VND7 expression that regulates TE differentiation-related genes (PubMed:19088331). Functions in the initiation and emergence of lateral roots, in conjunction with LBD16, downstream of ARF7 and ARF19 (PubMed:19717544, PubMed:23749813). Transcriptional activator that directly regulates EXPA14, a gene encoding a cell wall-loosening factor that promotes lateral root emergence. Activates EXPA14 by directly binding to a specific region of its promoter (PubMed:22974309). Transcriptional activator that directly regulates EXPA17, a gene encoding a cell wall-loosening factor that promotes lateral root emergence (PubMed:23872272). Acts downstream of the auxin influx carriers AUX1 and LAX1 in the regulation of lateral root initiation and development (PubMed:26059335). {ECO:0000269|PubMed:19088331, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:22974309, ECO:0000269|PubMed:23749813, ECO:0000269|PubMed:23872272, ECO:0000269|PubMed:26059335}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA27852 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By auxin. {ECO:0000269|PubMed:15659631, ECO:0000269|PubMed:19717544, ECO:0000269|PubMed:23749813}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003623721.1 | 2e-64 | LOB domain-containing protein 18 | ||||
Swissprot | O22131 | 6e-51 | LBD18_ARATH; LOB domain-containing protein 18 | ||||
Swissprot | O81322 | 3e-51 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | A0A396H1Z5 | 2e-63 | A0A396H1Z5_MEDTR; Putative transcription factor AS2-LOB family | ||||
STRING | AES79939 | 6e-64 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45420.1 | 3e-52 | LOB domain-containing protein 18 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA27852 |
Publications ? help Back to Top | |||
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