PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA27847 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 195aa MW: 21779.7 Da PI: 8.2936 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 114.3 | 7.9e-36 | 11 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakd.Cvlapyfpaeq..pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvil 81 +C aCk+lrrkC+k+ C++apyf ++ +++fa+vhk+FGasn kll ++p ++r da+ +l+yeA ara dPvyG+v++i+ Tp57577_TGAC_v2_mRNA27847 11 PCGACKFLRRKCVKGcCIFAPYFESSGqgSAHFAAVHKVFGASNAAKLLMRIPVHKRLDAVVTLCYEALARATDPVYGCVAHIF 94 7*************9789*****7744257****************************************************** PP DUF260 82 klqqqleqlkaelallkee 100 +lqqq+ +l+aela+++++ Tp57577_TGAC_v2_mRNA27847 95 ALQQQVVELQAELAYVQAR 113 ***************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 20.109 | 10 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.5E-35 | 11 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 195 aa Download sequence Send to blast |
MDLRYGGRDG PCGACKFLRR KCVKGCCIFA PYFESSGQGS AHFAAVHKVF GASNAAKLLM 60 RIPVHKRLDA VVTLCYEALA RATDPVYGCV AHIFALQQQV VELQAELAYV QARLSILKNR 120 ISQEPQFQQP QNSSISPTMH SSSLHHLSSN NETSYMSMQN HHPIPFELSN FHNNPSYYSY 180 HQQLNDQELQ PNLP* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-32 | 7 | 107 | 7 | 104 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-32 | 7 | 107 | 7 | 104 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA27847 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003623743.1 | 1e-108 | LOB domain-containing protein 19 | ||||
Swissprot | O81322 | 1e-52 | LBD31_ARATH; LOB domain-containing protein 31 | ||||
TrEMBL | G7L0B7 | 1e-106 | G7L0B7_MEDTR; LOB domain protein | ||||
STRING | AES79961 | 1e-107 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1771 | 34 | 93 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G45410.1 | 5e-46 | LOB domain-containing protein 19 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA27847 |