PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2781
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 683aa    MW: 75963.8 Da    PI: 5.2381
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2781genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH278e-09372420355
                               HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                       HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +h+ +Er RR++i +++  L+el+P +    sk   Ka +L + ++Y++sLq
  Tp57577_TGAC_v2_mRNA2781 372 NSHSLAERVRREKISERMKFLQELVPGC----SKVTGKAVMLDEIINYVQSLQ 420
                               58*************************9....556*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.53E-11367424No hitNo description
SuperFamilySSF474591.2E-16367438IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.459369419IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-16370436IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.8E-6372420IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-10375425IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 683 aa     Download sequence    Send to blast
MSDKEKFEVD GNGEPMSYSD GMPPDWRFGG GGNLVNSSLG LVSIGNSMNI DREDLIGSSS  60
CSSASMVDSF SPNFWDHSAN SQNLGFCDIN GSSSNTIGIR KDGFGFGRGG HDHGTLEVGW  120
NQANSMMMKG DGFLQNVQGV FPQSLSQFPT DSGFIERAAR FSCFGGGNFG DVVNSYGIPQ  180
SMAMYAGTIH GARDGHAGIG LKVGIGGQSQ ERDDPKVVEG TKGVSLSVEQ LATRGSPLKN  240
DKSESRAVSQ DDGRKALVRN VNDSDRGESG DDDVRGDGQE GSPMLEGTTS GEPSIKGLNS  300
KKRKRSGQDP DNDKADGARE LQSEGAKDNA ENQQKGDQTK DSGKNAKQGS QTSDPPKEEY  360
IHVRARRGQA TNSHSLAERV RREKISERMK FLQELVPGCS KVTGKAVMLD EIINYVQSLQ  420
RQVEFLSMKL ATVNPRLDFN IEGLLAXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  480
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  540
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  600
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  660
XXXXXXXXXX XXXXXXXXXX XX*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1300305KKRKRS
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2781
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024639981.10.0transcription factor bHLH49
RefseqXP_024639982.10.0transcription factor bHLH49
RefseqXP_024639983.10.0transcription factor bHLH49
RefseqXP_024639984.10.0transcription factor bHLH49
RefseqXP_024639985.10.0transcription factor bHLH49
RefseqXP_024639986.10.0transcription factor bHLH49
RefseqXP_024639987.10.0transcription factor bHLH49
RefseqXP_024639988.10.0transcription factor bHLH49
TrEMBLA0A072UE550.0A0A072UE55_MEDTR; BHLH transcription factor
STRINGXP_004490333.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72493248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.23e-83bHLH family protein