PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA27779 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 251aa MW: 27931.8 Da PI: 9.978 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 99.9 | 1.6e-31 | 178 | 236 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +d +++++tYegeHnh+ Tp57577_TGAC_v2_mRNA27779 178 TDDYSWRKYGQKPIKGSPHPRGYYKCSSVkGCPARKHVERALDDSSMLVVTYEGEHNHS 236 69*************************988****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF10533 | 3.8E-15 | 139 | 175 | IPR018872 | Zn-cluster domain |
Gene3D | G3DSA:2.20.25.80 | 2.8E-33 | 165 | 236 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.928 | 172 | 238 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.79E-27 | 174 | 237 | IPR003657 | WRKY domain |
SMART | SM00774 | 4.2E-38 | 177 | 237 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.5E-27 | 179 | 235 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 251 aa Download sequence Send to blast |
MTVELIMEYR NNKFQENAVE EAASGLQSID KLIKLLSSNS KSNSMEFTEI DQMDYKTVAD 60 VAVSKFKNVI SLLNNQNRTR TGHARFRRAP LPSSSATLSE TIVYHATPLQ QIPPLAPKTI 120 IDFSHNSSAN SFMSSSCSLK KKCSSSSGHC HCSKKRKMRL RRVVRVAAIS LKMADIPTDD 180 YSWRKYGQKP IKGSPHPRGY YKCSSVKGCP ARKHVERALD DSSMLVVTYE GEHNHSLSTT 240 EANNLILESS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 3e-23 | 165 | 237 | 2 | 73 | WRKY transcription factor 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 139 | 156 | KKKCSSSSGHCHCSKKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA27779 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | CT025837 | 2e-53 | CT025837.1 Medicago truncatula chromosome 5 clone mth2-28f11, COMPLETE SEQUENCE. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003611676.1 | 1e-128 | probable WRKY transcription factor 15 | ||||
Swissprot | O22176 | 1e-73 | WRK15_ARATH; Probable WRKY transcription factor 15 | ||||
TrEMBL | A0A2K3L4R3 | 0.0 | A0A2K3L4R3_TRIPR; WRKY transcription factor | ||||
STRING | AES94634 | 1e-127 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2177 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G23320.1 | 3e-46 | WRKY DNA-binding protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA27779 |
Publications ? help Back to Top | |||
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