PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA27763

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 283aa MW: 31998.4 Da PI: 8.3489

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA27763	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	84.1	2.3e-26	168	256	2	90
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fY YA++vGF vr+ + ++s +g++ r++ C+k+g++ ++k + k +r+r+++r gC+a++ vk+ek+gkw+vt++ ++H Tp57577_TGAC_v2_mRNA27763 168 FYVGYARRVGFAVRVMQRRRSGIDGRTLARRLGCNKQGFSPNNKGTLGKDKRPRPSSREGCNATILVKMEKSGKWVVTRFIKDH 251 9********************************************************************************* PP FAR1 86 nHela 90 nH+l Tp57577_TGAC_v2_mRNA27763 252 NHPLI 256 *96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.8E-24	168	256	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 283 aa Download sequence Send to blast
MFLANEFYQV FQDVLYLGSE QSPKDYYPNQ QNGTYRQSSM SSSSTTSVHV TALDGLVNVN 60 SLFTIAVFVG LSLTTPGQLN FTYNTPHKII SLQFLLSWLQ IIFKSRFTEK LFLCCFTVCM 120 DFVEVDPDKG NEPDHSCLEE STNIFDGVEV QEPYVGMEFD SEEAARTFYV GYARRVGFAV 180 RVMQRRRSGI DGRTLARRLG CNKQGFSPNN KGTLGKDKRP RPSSREGCNA TILVKMEKSG 240 KWVVTRFIKD HNHPLISTAN GFSTEVSFLL AYNVYLVFHL FK*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	217	221	KRPRP

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA27763

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC157777	1e-159	AC157777.2 Medicago truncatula chromosome 7 clone mth2-25c14, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024625371.1	1e-90	protein FAR1-RELATED SEQUENCE 5-like isoform X2
Refseq	XP_024625372.1	1e-90	protein FAR1-RELATED SEQUENCE 5-like isoform X2
TrEMBL	A0A2K3P2B4	1e-117	A0A2K3P2B4_TRIPR; Protein FAR1-related sequence 5-like
STRING	XP_007140743.1	1e-86	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF965	31	104

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G12850.2	2e-50	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA27763