PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2772
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 1153aa    MW: 132282 Da    PI: 7.4868
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2772genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR179.65.6e-2589179190
                      FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 
                               +fYn+YA++ GF vrksk  +s ++gei +rtfvC +eg+re++  + ++++r++++etr gC+ak++v+ ++ +++w++t + +
  Tp57577_TGAC_v2_mRNA2772  89 EFYNRYARMNGFAVRKSKILYS-KKGEILQRTFVCHREGFREDRGLTiENRKRERKPETRSGCDAKFRVHIDTlSQRWQITVFTN 172
                               6*******************99.6777*****************999778889999***************************** PP

                      FAR1  84 eHnHela 90 
                               +HnHel 
  Tp57577_TGAC_v2_mRNA2772 173 QHNHELL 179
                               *****95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-2289179IPR004330FAR1 DNA binding domain
PfamPF105515.1E-32299393IPR018289MULE transposase domain
PROSITE profilePS5096610.633576612IPR007527Zinc finger, SWIM-type
SMARTSM005750.0014587614IPR006564Zinc finger, PMZ-type
PfamPF044344.0E-5588608IPR007527Zinc finger, SWIM-type
SuperFamilySSF540011.74E-59301080No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1153 aa     Download sequence    Send to blast
MENNVEEHVQ MDESVASMEG LEDSSVGVSR DEAPCDTTDD DAISVEASEG TGIFLNIDSM  60
EDILSLNLKG LSPHETRKFQ FSSLEMAYEF YNRYARMNGF AVRKSKILYS KKGEILQRTF  120
VCHREGFRED RGLTIENRKR ERKPETRSGC DAKFRVHIDT LSQRWQITVF TNQHNHELLD  180
EKYCVMLPAH RRMKESDTVQ MNDMLKGGIG PSQFYASMAN QAGGYENIGF RRKDLYNQIG  240
KQRRLKHCDG KNALHYLRGL ASDDPMMFYR HTVDGEGRLE HLFWCDGISQ MDYQVYGDVL  300
AFDATYGRNK YHCPLVVFCG VNNHNNNVIF AGAIVANEKE ETYVWVLEQF LKAMSGKSPV  360
SVITDGDLAM KNAIKRVFPN AYHRLCAWHL IRNATSNIGV PEFVGQFRKC MLRDYDLGEF  420
RRKWTEMVDT FGLHENKWVT DLYAKRKMWA TAHIRGNFFA GFRTTSRCEG LHSEIGKFLH  480
SRYNLSDFLL HFHRCLNYMR YKEVEADFAS NYGDTVLQTR FRSMESCAEK LFTREIFFIF  540
REFLARSAEM VVTASNQTYT CFIYTVCKYQ ASKREWNVSF YPDDNVFKCS CKKMESFGLP  600
CEHIIAVLVF LDVAELPNTL VAARWTKNAK EAICSTNKNL PKYWDSHKSS RYSALMFRYM  660
RLSKLVSESG DDFNYHMEQA AADIHKMETK RGLHDDGGAT NSGQTDHEIL RDPAPVRSKG  720
CAGVSSSSTR KKRKPGQCTV CKEYGHNKQT CEIRRHRANK THSADADRHN NDFSDDSSYD  780
VPDTMKDLKS TVDDALAILQ VHSSQMNEMK NMVSIMLGKM VLIETMLQKA PKTSVPNLSQ  840
VPTVAKRNKA SVPEQKSVAK SPYNQSKSSS NYILLDSDND DDYKVQMKKS SIQSSCSQGS  900
KLVQTNFVTT KEMKLQLVEE YVSCYVFHDK NDPSEELFKV ETLKGSRREF QTLCPGRVID  960
REIIHMMSFK MNWMERNAAS QTIWSLPPSF AVDVYGGVTI EELIEKYGKN WMPHFENLKH  1020
IYIPIDDCVG NWFLMVAAVD DQVLYHLDPG FETRTTITRQ GVIKKVWQVI TEMVQTMAQA  1080
NYYPPEFLRE VDKDNWDMAD PVGLVSEGFC QHSAVWVLQW LAMGSSFTPN IHVMVGGSFA  1140
PPLLIPLVYR VQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2772
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020206958.10.0protein FAR1-RELATED SEQUENCE 5-like, partial
TrEMBLA0A2Z6LT400.0A0A2Z6LT40_TRISU; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3265734
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-93FAR1-related sequence 5