PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA2772 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | FAR1 | ||||||||
Protein Properties | Length: 1153aa MW: 132282 Da PI: 7.4868 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 79.6 | 5.6e-25 | 89 | 179 | 1 | 90 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYn+YA++ GF vrksk +s ++gei +rtfvC +eg+re++ + ++++r++++etr gC+ak++v+ ++ +++w++t + + Tp57577_TGAC_v2_mRNA2772 89 EFYNRYARMNGFAVRKSKILYS-KKGEILQRTFVCHREGFREDRGLTiENRKRERKPETRSGCDAKFRVHIDTlSQRWQITVFTN 172 6*******************99.6777*****************999778889999***************************** PP FAR1 84 eHnHela 90 +HnHel Tp57577_TGAC_v2_mRNA2772 173 QHNHELL 179 *****95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-22 | 89 | 179 | IPR004330 | FAR1 DNA binding domain |
Pfam | PF10551 | 5.1E-32 | 299 | 393 | IPR018289 | MULE transposase domain |
PROSITE profile | PS50966 | 10.633 | 576 | 612 | IPR007527 | Zinc finger, SWIM-type |
SMART | SM00575 | 0.0014 | 587 | 614 | IPR006564 | Zinc finger, PMZ-type |
Pfam | PF04434 | 4.0E-5 | 588 | 608 | IPR007527 | Zinc finger, SWIM-type |
SuperFamily | SSF54001 | 1.74E-5 | 930 | 1080 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1153 aa Download sequence Send to blast |
MENNVEEHVQ MDESVASMEG LEDSSVGVSR DEAPCDTTDD DAISVEASEG TGIFLNIDSM 60 EDILSLNLKG LSPHETRKFQ FSSLEMAYEF YNRYARMNGF AVRKSKILYS KKGEILQRTF 120 VCHREGFRED RGLTIENRKR ERKPETRSGC DAKFRVHIDT LSQRWQITVF TNQHNHELLD 180 EKYCVMLPAH RRMKESDTVQ MNDMLKGGIG PSQFYASMAN QAGGYENIGF RRKDLYNQIG 240 KQRRLKHCDG KNALHYLRGL ASDDPMMFYR HTVDGEGRLE HLFWCDGISQ MDYQVYGDVL 300 AFDATYGRNK YHCPLVVFCG VNNHNNNVIF AGAIVANEKE ETYVWVLEQF LKAMSGKSPV 360 SVITDGDLAM KNAIKRVFPN AYHRLCAWHL IRNATSNIGV PEFVGQFRKC MLRDYDLGEF 420 RRKWTEMVDT FGLHENKWVT DLYAKRKMWA TAHIRGNFFA GFRTTSRCEG LHSEIGKFLH 480 SRYNLSDFLL HFHRCLNYMR YKEVEADFAS NYGDTVLQTR FRSMESCAEK LFTREIFFIF 540 REFLARSAEM VVTASNQTYT CFIYTVCKYQ ASKREWNVSF YPDDNVFKCS CKKMESFGLP 600 CEHIIAVLVF LDVAELPNTL VAARWTKNAK EAICSTNKNL PKYWDSHKSS RYSALMFRYM 660 RLSKLVSESG DDFNYHMEQA AADIHKMETK RGLHDDGGAT NSGQTDHEIL RDPAPVRSKG 720 CAGVSSSSTR KKRKPGQCTV CKEYGHNKQT CEIRRHRANK THSADADRHN NDFSDDSSYD 780 VPDTMKDLKS TVDDALAILQ VHSSQMNEMK NMVSIMLGKM VLIETMLQKA PKTSVPNLSQ 840 VPTVAKRNKA SVPEQKSVAK SPYNQSKSSS NYILLDSDND DDYKVQMKKS SIQSSCSQGS 900 KLVQTNFVTT KEMKLQLVEE YVSCYVFHDK NDPSEELFKV ETLKGSRREF QTLCPGRVID 960 REIIHMMSFK MNWMERNAAS QTIWSLPPSF AVDVYGGVTI EELIEKYGKN WMPHFENLKH 1020 IYIPIDDCVG NWFLMVAAVD DQVLYHLDPG FETRTTITRQ GVIKKVWQVI TEMVQTMAQA 1080 NYYPPEFLRE VDKDNWDMAD PVGLVSEGFC QHSAVWVLQW LAMGSSFTPN IHVMVGGSFA 1140 PPLLIPLVYR VQ* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA2772 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020206958.1 | 0.0 | protein FAR1-RELATED SEQUENCE 5-like, partial | ||||
TrEMBL | A0A2Z6LT40 | 0.0 | A0A2Z6LT40_TRISU; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3265 | 7 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G38180.1 | 4e-93 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA2772 |