PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27685
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 416aa    MW: 48070.2 Da    PI: 7.914
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27685genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP126.33.2e-391472933134
                        TCP   3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec..eae 76 
                                 k+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGf k+skt++WLl+q+k++ik l++         s+ss sec     
  Tp57577_TGAC_v2_mRNA27685 147 SKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKHEIKLLVREknlhfpskSASSTSECteG-- 228
                                69****************************************************************9987655555777431.. PP

                        TCP  77 sssssasnsssg........kaaksaa.kskksqksaasalnlakesrakarararertrekmrikn 134
                                 ss  ++   ++        +     +  +++++++   +++++   r+kar+rarert+ek ++  
  Tp57577_TGAC_v2_mRNA27685 229 VSSLDNE--VENleepqqkqETVVMMKkRTRNRTNKVCRKSAFNSIGREKARERARERTKEKLMKAR 293
                                3333322..222224444222222222133333333344555666888**************98765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.6E-40147290IPR005333Transcription factor, TCP
PROSITE profilePS5136932.235148206IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137010.258271288IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000032Biological Processregulation of secondary shoot formation
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 416 aa     Download sequence    Send to blast
MYSSNSCLNG NNLTFSSSKS PFSNSFESNS TSSKDHHDQN IHSLFPLPPF PFFQFPNYPD  60
DIHDPFQDNH QIFDDGDFHL HHSPHVVSTD HNQNQQDQQR QRPSNSSVIN ANNDIVVNNL  120
VSEAGDTKGK TIVNHQVKQI QQRKRSSKRD RHSKIKTAKG LRDRRMRLSL EVAKRFFGLQ  180
DMLGFEKASK TVDWLLNQSK HEIKLLVREK NLHFPSKSAS STSECTEGVS SLDNEVENLE  240
EPQQKQETVV MMKKRTRNRT NKVCRKSAFN SIGREKARER ARERTKEKLM KARTRTSLVD  300
ESSSKQCNDE EEGTKTNLIW NPFESVEESG GCTNQRQSVN HPSFDHVKLI NEDEVERSCQ  360
KAKEQDSEED DSLFIMSKWS PPLMFNSLNN LQQHQFEQFH QSMEKPCWEG YNNRI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27685
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013458053.10.0transcription factor DICHOTOMA
RefseqXP_024638725.10.0transcription factor DICHOTOMA
TrEMBLA0A2K3N5060.0A0A2K3N506_TRIPR; Transcription factor TCP18-like protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF65642851
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18550.26e-20TCP family protein