PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA27685 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | TCP | ||||||||
Protein Properties | Length: 416aa MW: 48070.2 Da PI: 7.914 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 126.3 | 3.2e-39 | 147 | 293 | 3 | 134 |
TCP 3 gkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt........ssssasec..eae 76 k+drhski T++g+RdRR+Rls+e+a+rfF Lqd+LGf k+skt++WLl+q+k++ik l++ s+ss sec Tp57577_TGAC_v2_mRNA27685 147 SKRDRHSKIKTAKGLRDRRMRLSLEVAKRFFGLQDMLGFEKASKTVDWLLNQSKHEIKLLVREknlhfpskSASSTSECteG-- 228 69****************************************************************9987655555777431.. PP TCP 77 sssssasnsssg........kaaksaa.kskksqksaasalnlakesrakarararertrekmrikn 134 ss ++ ++ + + +++++++ +++++ r+kar+rarert+ek ++ Tp57577_TGAC_v2_mRNA27685 229 VSSLDNE--VENleepqqkqETVVMMKkRTRNRTNKVCRKSAFNSIGREKARERARERTKEKLMKAR 293 3333322..222224444222222222133333333344555666888**************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.6E-40 | 147 | 290 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 32.235 | 148 | 206 | IPR017887 | Transcription factor TCP subgroup |
PROSITE profile | PS51370 | 10.258 | 271 | 288 | IPR017888 | CYC/TB1, R domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:2000032 | Biological Process | regulation of secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 416 aa Download sequence Send to blast |
MYSSNSCLNG NNLTFSSSKS PFSNSFESNS TSSKDHHDQN IHSLFPLPPF PFFQFPNYPD 60 DIHDPFQDNH QIFDDGDFHL HHSPHVVSTD HNQNQQDQQR QRPSNSSVIN ANNDIVVNNL 120 VSEAGDTKGK TIVNHQVKQI QQRKRSSKRD RHSKIKTAKG LRDRRMRLSL EVAKRFFGLQ 180 DMLGFEKASK TVDWLLNQSK HEIKLLVREK NLHFPSKSAS STSECTEGVS SLDNEVENLE 240 EPQQKQETVV MMKKRTRNRT NKVCRKSAFN SIGREKARER ARERTKEKLM KARTRTSLVD 300 ESSSKQCNDE EEGTKTNLIW NPFESVEESG GCTNQRQSVN HPSFDHVKLI NEDEVERSCQ 360 KAKEQDSEED DSLFIMSKWS PPLMFNSLNN LQQHQFEQFH QSMEKPCWEG YNNRI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA27685 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458053.1 | 0.0 | transcription factor DICHOTOMA | ||||
Refseq | XP_024638725.1 | 0.0 | transcription factor DICHOTOMA | ||||
TrEMBL | A0A2K3N506 | 0.0 | A0A2K3N506_TRIPR; Transcription factor TCP18-like protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF6564 | 28 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G18550.2 | 6e-20 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA27685 |