PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA27498

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

Trihelix

Protein Properties

Length: 995aa MW: 112444 Da PI: 7.4654

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA27498	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	27.5	7.9e-09	210	272	18	81
trihelix 18 eerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpy 81 e l+rgk ++ + +ev++++ ++g++r +k+ kw+n+ ++++k+ e+e++++ e++ +y Tp57577_TGAC_v2_mRNA27498 210 ELGLSRGKTRADKDKEVAEFLNKHGVSRDAKTAGTKWDNMLGEFRKVYEWERGGEREQV-GKSY 272 3445678999******************************************9965555.3445 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF56112	3.86E-17	806	967	IPR011009	Protein kinase-like domain
CDD	cd00180	4.61E-14	829	965	No hit	No description
Gene3D	G3DSA:1.10.510.10	1.4E-7	831	968	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 995 aa Download sequence Send to blast
MVGDKGDTSK KQQQQPQQVS SSPKAPPHEE SSSQQQQVVV VSGTITNPFI STPLFVSTSG 60 ASSSPFENQF ETTKRPRYSG QWKLLPSPQQ QQQKQPQTQT QTQITNILNQ TTESKSTTPS 120 PSNLPQQQQP QTLAASSSET TSSQSHDHLS PMPCQEGNKH EEQVHQQLRK GKYVSPVWKP 180 NEMLWLARAW KEQYQTGSDS SSRTEQQQQE LGLSRGKTRA DKDKEVAEFL NKHGVSRDAK 240 TAGTKWDNML GEFRKVYEWE RGGEREQVGK SYFRLSPYER KLHRLPASFD EEVFEELSQF 300 MGSRMRSSSS SHGGRIGSSF VSCDEARTRS LPPPRPFKDD DLPLSARTKQ LTMTSGGDQQ 360 FFHGHGGSLL GLDSLMEIST PTSSLKELRR IGKIRMTWEE SVSLWGEEGE VHRGRIRVQN 420 SSFLHADEIT CFDDTMVICP LESFEDGPLK GFSVDRFVSG QQVKVFGRRK SSSTSSSSGY 480 AERVQPLNKP IPIRSIVPLD FRDPTEYYME HLLKISSPQS LPTLFELKHY LQEPPPQNLR 540 FPLRKEVFDD LPQGKDFFFT TTSEPLDCRS IIYDIVGPII RTNNNINNPS TLPFSSRDSF 600 IGVWDDCINR VVSRFCHNEM VITRKPFSSN SQSQDTLFEE EWPNVSGFVN NFCLWRGEEC 660 EELKENIQNP SSTIIQKLLW SYLDLPYILG YYAIGNKVTF CALSKSHEDH GKIIRTDLHE 720 VNLNTPSERF KSLVPCFRIG VLLSLLSKSC INMQKGSFVY SDFERYCFGQ GVIIEMTPNT 780 CKRVFLEKRK FSSVKEVYEI LDHRIPHSEY LFKVNENNMS LVFKPRGIRV KPLNIEQLVE 840 ALKYVTKALV ALHDLSFMHR DIGWEKVMMR NDGEIGEWFV SGFDEAAGAP ALGKFVKGKG 900 DNMVERGRHA PEMERGLHGV KVDVWSIGYL IMTCGLVNVP KMLRELQNWC MEQNPEQRPT 960 AADCYHHLLQ LQSSLLVSGG GGSVGGGGGG GGLM*

Sequence ? help Back to Top

Protein Sequence Length: 995 aa Download sequence Send to blast

MVGDKGDTSK KQQQQPQQVS SSPKAPPHEE SSSQQQQVVV VSGTITNPFI STPLFVSTSG  60
ASSSPFENQF ETTKRPRYSG QWKLLPSPQQ QQQKQPQTQT QTQITNILNQ TTESKSTTPS  120
PSNLPQQQQP QTLAASSSET TSSQSHDHLS PMPCQEGNKH EEQVHQQLRK GKYVSPVWKP  180
NEMLWLARAW KEQYQTGSDS SSRTEQQQQE LGLSRGKTRA DKDKEVAEFL NKHGVSRDAK  240
TAGTKWDNML GEFRKVYEWE RGGEREQVGK SYFRLSPYER KLHRLPASFD EEVFEELSQF  300
MGSRMRSSSS SHGGRIGSSF VSCDEARTRS LPPPRPFKDD DLPLSARTKQ LTMTSGGDQQ  360
FFHGHGGSLL GLDSLMEIST PTSSLKELRR IGKIRMTWEE SVSLWGEEGE VHRGRIRVQN  420
SSFLHADEIT CFDDTMVICP LESFEDGPLK GFSVDRFVSG QQVKVFGRRK SSSTSSSSGY  480
AERVQPLNKP IPIRSIVPLD FRDPTEYYME HLLKISSPQS LPTLFELKHY LQEPPPQNLR  540
FPLRKEVFDD LPQGKDFFFT TTSEPLDCRS IIYDIVGPII RTNNNINNPS TLPFSSRDSF  600
IGVWDDCINR VVSRFCHNEM VITRKPFSSN SQSQDTLFEE EWPNVSGFVN NFCLWRGEEC  660
EELKENIQNP SSTIIQKLLW SYLDLPYILG YYAIGNKVTF CALSKSHEDH GKIIRTDLHE  720
VNLNTPSERF KSLVPCFRIG VLLSLLSKSC INMQKGSFVY SDFERYCFGQ GVIIEMTPNT  780
CKRVFLEKRK FSSVKEVYEI LDHRIPHSEY LFKVNENNMS LVFKPRGIRV KPLNIEQLVE  840
ALKYVTKALV ALHDLSFMHR DIGWEKVMMR NDGEIGEWFV SGFDEAAGAP ALGKFVKGKG  900
DNMVERGRHA PEMERGLHGV KVDVWSIGYL IMTCGLVNVP KMLRELQNWC MEQNPEQRPT  960
AADCYHHLLQ LQSSLLVSGG GGSVGGGGGG GGLM*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA27498

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024630589.1	0.0	uncharacterized protein LOC25479493
TrEMBL	A0A072TK71	0.0	A0A072TK71_MEDTR; Kinase superfamily protein
STRING	XP_004506307.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11857	28	31

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33550.1	2e-07	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA27498