PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27470
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 315aa    MW: 36347.7 Da    PI: 5.6267
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27470genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.73.1e-06185228755
                                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                ++ r RR++i ++ +eL +l+P        K++ ae+   A +Y+k Lq
  Tp57577_TGAC_v2_mRNA27470 185 IAARERRRKITEKTQELGKLVPGG-----SKMNTAEMFNAAANYVKFLQ 228
                                56799*****************95.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.271178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.67E-11181236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-10183235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.58E-8184231No hitNo description
SMARTSM003533.0E-9184233IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MGALSPYYNY NCYPYQPHQT NNNSELITFQ HHEQQQQSSL PQLSQISEHN NNHHFSSYLD  60
ETLFFQSPYF YSNETYPSHE QLLIDTTFSS QNDGFISMNE IFSNEQDFNF NTYLPKRQKL  120
CYEEKKVQQQ EELLNSTNFF VDEFITNPFV SFEAEPQFYG SASKIVDVVG CEKKVNEKTI  180
SPQSIAARER RRKITEKTQE LGKLVPGGSK MNTAEMFNAA ANYVKFLQAQ VGMLQVMGTL  240
SKEEKEPPPS KDLHNLLVSP FVQEKLYLEE KCFVPKEFVT TLTNHDDVRS KPTILKGLKQ  300
LIGTEINEKK PKQE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27470
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013464235.11e-131transcription factor bHLH52
TrEMBLA0A072VKB31e-155A0A072VKB3_MEDTR; Helix loop helix DNA-binding domain protein
STRINGAES848891e-131(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF34593065
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30670.14e-31bHLH family protein