PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA27264 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | NF-YA | ||||||||
Protein Properties | Length: 217aa MW: 24068.5 Da PI: 7.135 | ||||||||
Description | NF-YA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CBFB_NFYA | 103.2 | 2.4e-32 | 121 | 177 | 1 | 58 |
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep++VNaKQy++Il+RRq+Rak+e+ekk+ +++rkpylheSRh hAl+R+Rg+gGrF Tp57577_TGAC_v2_mRNA27264 121 EEPVFVNAKQYHGILRRRQSRAKAESEKKV-TRNRKPYLHESRHLHALKRARGCGGRF 177 69****************************.**************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00521 | 2.3E-36 | 119 | 180 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE profile | PS51152 | 37.026 | 120 | 180 | IPR001289 | Nuclear transcription factor Y subunit A |
Pfam | PF02045 | 1.3E-27 | 122 | 177 | IPR001289 | Nuclear transcription factor Y subunit A |
PRINTS | PR00616 | 3.5E-23 | 123 | 145 | IPR001289 | Nuclear transcription factor Y subunit A |
PROSITE pattern | PS00686 | 0 | 125 | 145 | IPR018362 | CCAAT-binding factor, conserved site |
PRINTS | PR00616 | 3.5E-23 | 154 | 177 | IPR001289 | Nuclear transcription factor Y subunit A |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0016602 | Cellular Component | CCAAT-binding factor complex | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 217 aa Download sequence Send to blast |
LDRVHVNQEN MTSSTHDLTD NEGDGQQQSE SQMQQPISAN GISHAGIDTQ IVQYAAPPQL 60 GAGHAMVPPP YPYPDPYYRS VFAPYDAQPY QLQPYGGHPM ANLQLMGIQH PGVPLPTDAV 120 EEPVFVNAKQ YHGILRRRQS RAKAESEKKV TRNRKPYLHE SRHLHALKRA RGCGGRFLNS 180 KKDENQQDEV GSADNSHSNI NLNSERNDLA PSDKNS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4awl_A | 8e-21 | 120 | 185 | 1 | 66 | NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA27264 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT146024 | 0.0 | BT146024.1 Medicago truncatula clone JCVI-FLMt-11O7 unknown mRNA. | |||
GenBank | JQ918271 | 0.0 | JQ918271.1 Medicago truncatula nuclear transcription factor Y subunit A6 (NF-YA6) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003594522.1 | 1e-121 | nuclear transcription factor Y subunit A-7 | ||||
Swissprot | Q84JP1 | 6e-64 | NFYA7_ARATH; Nuclear transcription factor Y subunit A-7 | ||||
TrEMBL | A0A2Z6NGU8 | 1e-126 | A0A2Z6NGU8_TRISU; Uncharacterized protein | ||||
STRING | XP_004486451.1 | 1e-117 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5379 | 33 | 55 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G30500.2 | 2e-52 | nuclear factor Y, subunit A7 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA27264 |
Publications ? help Back to Top | |||
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