PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA27183 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 159aa MW: 18475.2 Da PI: 6.5174 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.1 | 4.8e-09 | 20 | 65 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 WT e+ +l+ +a + + +W+ Ia+ + g+++ q+k+++ + Tp57577_TGAC_v2_mRNA27183 20 QWTREDNKLFEKALITVPENssnRWEEIAEQVS-GKSASQVKDHYED 65 6********************************.***********76 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.8E-6 | 17 | 69 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 4.24E-12 | 19 | 75 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.0E-5 | 20 | 65 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.8E-7 | 20 | 66 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 7.189 | 21 | 67 | IPR017877 | Myb-like domain |
CDD | cd00167 | 3.77E-6 | 21 | 67 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
MHQKTIDMAA AAARTLWPTQ WTREDNKLFE KALITVPENS SNRWEEIAEQ VSGKSASQVK 60 DHYEDLVHDI LEIESGRVEL PNYPDDLDVN SGSRMSRHGD NEKQKKRKGK PWTEEEHKXX 120 XXXXXXXXXX XXXXXXXXXX XXXXIQRRGM ETHFKILC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-14 | 21 | 83 | 11 | 73 | RADIALIS |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA27183 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_028184395.1 | 3e-34 | transcription factor DIVARICATA-like | ||||
TrEMBL | A0A392LZ49 | 3e-61 | A0A392LZ49_9FABA; Transcription factor DIVARICATA-like | ||||
STRING | GLYMA10G42450.1 | 1e-33 | (Glycine max) | ||||
STRING | AES84368 | 1e-33 | (Medicago truncatula) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 3e-28 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA27183 |