PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27175
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 344aa    MW: 37535.7 Da    PI: 5.0425
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27175genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.65.7e-17119165252
                        AP2   2 gykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkk 52 
                                +y+GVr +k +g+W+AeIrd +     + +r++lg++ taeeA +a++  +++
  Tp57577_TGAC_v2_mRNA27175 119 RYRGVRMRK-WGKWAAEIRDpF-----KgARIWLGTYNTAEEASQAYESKKLQ 165
                                69*****99.**********55.....45******************988776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.50.409.0E-467101No hitNo description
CDDcd000181.94E-22118159No hitNo description
SuperFamilySSF541711.9E-16119166IPR016177DNA-binding domain
SMARTSM003802.5E-17119173IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-21119171IPR001471AP2/ERF domain
PfamPF008471.3E-10119167IPR001471AP2/ERF domain
PROSITE profilePS5103219.427119180IPR001471AP2/ERF domain
PRINTSPR003676.3E-10120131IPR001471AP2/ERF domain
PRINTSPR003676.3E-10142158IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MMMGSRKSRA KPRPQPLKES KLMTRNLRIV FDDPEATDSS EDESNQSTRI RRSIIDVPIP  60
PVVSAVLSQN SCSEKPKIAT ATRKKKTCLS PQSQTKKKVV SSTPTTAAAV TRGGQSSARY  120
RGVRMRKWGK WAAEIRDPFK GARIWLGTYN TAEEASQAYE SKKLQFEMME AEMAAGTRLK  180
GGTGSSAAAT RASAAASNNN YSADAANASM SEKFSTTTED SHSLFSHGSP SSVLELDTLA  240
SSNMVEKVDV PSPPVAAAAE NPIGTDPNLG FGFDFDRFNI DNFDLGYDDF DDDLGDLRDL  300
HIHGFDDNVP SELPDFDFAA DDEEFTAWFE EPLQHNMPCP KVL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-11114161957Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27175
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003627490.21e-125ethylene-responsive transcription factor ERF118
TrEMBLA0A2K3MZJ20.0A0A2K3MZJ2_TRIPR; Ethylene-responsive transcription factor erf118-like protein
STRINGXP_004497097.19e-95(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF26903472
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13330.11e-19related to AP2 6l