PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA2716 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | C3H | ||||||||
Protein Properties | Length: 133aa MW: 15306.1 Da PI: 8.6298 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 20.8 | 6.6e-07 | 58 | 78 | 6 | 26 |
-SGGGGTS--TTTTT-SS-SS CS zf-CCCH 6 CrffartGtCkyGdrCkFaHg 26 C++f +G+C+yGd+Ck+ H+ Tp57577_TGAC_v2_mRNA2716 58 CSHFINMGFCRYGDSCKYFHP 78 ******************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.83E-9 | 6 | 47 | No hit | No description |
PROSITE profile | PS50103 | 15.338 | 52 | 80 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 9.81E-7 | 55 | 80 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 8.3E-5 | 58 | 77 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 133 aa Download sequence Send to blast |
MPIRKYYCEK QFQDTLSDRK RHSAGIQHQQ AKARWYDSFK PQQQQQHNPN IPPNQPFCSH 60 FINMGFCRYG DSCKYFHPNT NNNIQQQHQP IINNTPRDVV VESMGVSLGN LPPSLQPPPE 120 GGYPHIAFVD WG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA2716 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004495629.1 | 6e-60 | zinc finger CCCH domain-containing protein 3 | ||||
Refseq | XP_004495630.1 | 6e-60 | zinc finger CCCH domain-containing protein 3 | ||||
Swissprot | Q0JP11 | 7e-31 | C3H3_ORYSJ; Zinc finger CCCH domain-containing protein 3 | ||||
TrEMBL | A0A2K3LWG9 | 3e-85 | A0A2K3LWG9_TRIPR; Zinc finger CCCH domain-containing protein 3-like | ||||
STRING | XP_004495629.1 | 2e-59 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11959 | 28 | 33 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G26749.1 | 1e-24 | C3H family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA2716 |
Publications ? help Back to Top | |||
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