PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27141
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 382aa    MW: 42281.1 Da    PI: 7.0505
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27141genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP1029.9e-3262174289
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.....ssssasec..eaess 78 
                                 g+kdrhsk+ T++g+RdRRvRls+++a++f+d+qd+LG+d++sk+++WL+++a  +i el+++     ++++++ +  +++++
  Tp57577_TGAC_v2_mRNA27141  62 SGGKDRHSKVMTSKGLRDRRVRLSVTTAIQFYDIQDRLGYDQPSKAVDWLIKAASDSISELPSLdttftQTDPKQPSyeNQSEN 145
                                689*************************************************************99988666666664333333 PP

                        TCP  79 sssasnsssg....................k 89 
                                +++++++  +                    k
  Tp57577_TGAC_v2_mRNA27141 146 QNQKQKH--NidnnnfclsksgcsstsetsK 174
                                3333333..3447777666544433322210 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036349.2E-3563183IPR005333Transcription factor, TCP
PROSITE profilePS5136930.28464122IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008285Biological Processnegative regulation of cell proliferation
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 382 aa     Download sequence    Send to blast
MENEIEPCKF PRLGNVINNS MNKNNIGSGR RKNVVGGSDF ESSWQQHQQQ NSSRIVRVSR  60
ASGGKDRHSK VMTSKGLRDR RVRLSVTTAI QFYDIQDRLG YDQPSKAVDW LIKAASDSIS  120
ELPSLDTTFT QTDPKQPSYE NQSENQNQKQ KHNIDNNNFC LSKSGCSSTS ETSKENECSI  180
IVQEQKHHQN MSQTASFTEL LTGGIGGSST VTSNNGAVHD QIHRHGGFLG QIQLGHSSHS  240
HSHQVSPFSG ENENNSDITQ LQHFPFMSSS SDQHNENHDD YNLNFTISSS GLVGYNRGTL  300
QSNSLLPHFQ RFSPVMDHGS STSSSSNNLP FFMGGSAAPP VATPTMDQQH LQFSPLFDAR  360
LQLFYGDGSR HSDQKEKCNK D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-2369123155Putative transcription factor PCF6
5zkt_B3e-2369123155Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00169DAPTransfer from AT1G30210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27141
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004486003.11e-115transcription factor TCP2
RefseqXP_004486006.11e-115transcription factor TCP2
RefseqXP_004486007.11e-115transcription factor TCP2
RefseqXP_004486008.11e-115transcription factor TCP2
RefseqXP_012568798.11e-115transcription factor TCP2
RefseqXP_012568800.11e-115transcription factor TCP2
RefseqXP_027186410.11e-115transcription factor TCP2
RefseqXP_027186411.11e-115transcription factor TCP2
RefseqXP_027186413.11e-115transcription factor TCP2
RefseqXP_027186414.11e-115transcription factor TCP2
RefseqXP_027186416.11e-115transcription factor TCP2
RefseqXP_027186427.11e-115transcription factor TCP2
TrEMBLA0A2K3NI440.0A0A2K3NI44_TRIPR; Transcription factor TCP2-like protein
STRINGXP_004485999.11e-115(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF40193156
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18390.24e-40TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 2