PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27107
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 441aa    MW: 50113.8 Da    PI: 4.4852
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27107genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.73e-1876123455
                        AP2   4 kGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                                 GVr+++ +grWvAeI+d      ++ r++lg+f+taeeAa+a+++a+  l+g
  Tp57577_TGAC_v2_mRNA27107  76 VGVRQRP-SGRWVAEIKDtI----QKIRVWLGTFDTAEEAARAYDEAACLLRG 123
                                5******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.103.5E-53757IPR001471AP2/ERF domain
PROSITE profilePS5103218.97937131IPR001471AP2/ERF domain
PRINTSPR003676.8E-83849IPR001471AP2/ERF domain
SMARTSM003806.1E-3374137IPR001471AP2/ERF domain
CDDcd000189.82E-3176130No hitNo description
SuperFamilySSF541711.05E-1876131IPR016177DNA-binding domain
PfamPF008474.2E-1376123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-2677130IPR001471AP2/ERF domain
PRINTSPR003676.8E-897113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 441 aa     Download sequence    Send to blast
MARKRKVSEV VEEGSMVWDE MMKEAASLGG ARRVRKRFVG VRQRPSGRWV AEIKDTIQKI  60
XXXXXXXXXX XXXXXVGVRQ RPSGRWVAEI KDTIQKIRVW LGTFDTAEEA ARAYDEAACL  120
LRGANTRTNF WPCSQSSTSP ALSSKITNLL LQRLKERNMN MNNSCSSFSS SKFTSLLGSS  180
GERQEKQRVN DQDHQEIQQV ETYEAGSKDF SIDQFTDFLN DHVDYTTINN EIINDTAQLD  240
YISSSFESCL TENNGCNKED EMNMESKSNN VTQTSSGGDS NSEDSEEEVN NDVPDFRFLD  300
DIAPTSYYSP FEIAEEMEEQ METESFCDEP SMIRAVMKRM KYERKFSASL YAFNGIPECL  360
KLKLESQGNN ISDQLNNLKE ACSKNKVEKK KDEKDEENNQ SSIELESSSL SRNDSDIFLW  420
NSLDLPPICF VNLLESGSFN *
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27107
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1194120.0AC119412.16 Medicago truncatula chromosome 6 clone mth2-31d18, complete sequence.
GenBankAC1498040.0AC149804.11 Medicago truncatula chromosome 6 clone mth2-73h22, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003618556.20.0ethylene-responsive transcription factor RAP2-12
TrEMBLA0A2K3LW220.0A0A2K3LW22_TRIPR; Ethylene-responsive transcription factor
STRINGAES747740.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.12e-21related to AP2 11