PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA27011
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family HSF
Protein Properties Length: 312aa    MW: 36573.5 Da    PI: 6.194
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA27011genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind111.55.9e-35391312103
                                HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESX CS
               HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhks 85 
                                Fl+k+y+i++d+++++++sws+ +nsfvv+d++ f+ ++Lp++Fkh+nf+SFvRQLn+YgFkkv+ ++         weF+++ 
  Tp57577_TGAC_v2_mRNA27011  39 FLTKTYDIVDDPSTNHIVSWSRGNNSFVVWDPRAFSVSLLPRFFKHNNFTSFVRQLNTYGFKKVDPDR---------WEFANEM 113
                                9****************************************************************999.........******* PP

                                XXXXXXXXXXXXXXXXXX CS
               HSF_DNA-bind  86 Fkkgkkellekikrkkse 103
                                F +g+k ll++i r++++
  Tp57577_TGAC_v2_mRNA27011 114 FLRGQKILLKNITRRRKT 131
                                **************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF467851.43E-3434128IPR011991Winged helix-turn-helix DNA-binding domain
Gene3DG3DSA:1.10.10.106.0E-3835128IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.0E-5835128IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.8E-3039128IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-193962IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-197789IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS00434078102IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.5E-1990102IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MNLHHGGVKE EFMGGSSSFC VVGDPQPMEG LHENGPPPFL TKTYDIVDDP STNHIVSWSR  60
GNNSFVVWDP RAFSVSLLPR FFKHNNFTSF VRQLNTYGFK KVDPDRWEFA NEMFLRGQKI  120
LLKNITRRRK TNQSQAMQQQ ALDPSCVEVG RFGLDGIEID RLRRDRQVLM VELVKLRQQQ  180
QNTRTYIEAM EERLKRNEHK QKQMMNFLVR AMQNPNFLQQ LVQKKEWRKE LEEVFCKKRR  240
RTIDQGPSNV EVGDVEEHAN LMNQLEIRDK EIDVEVFWQD LFKEDIEDEV DVEDVEVLVE  300
QLGYLASSLP K*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-233712818120Heat shock factor protein 1
5d5u_B1e-233712827129Heat shock factor protein 1
5d5v_B1e-233712827129Heat shock factor protein 1
5d5v_D1e-233712827129Heat shock factor protein 1
5hdg_A1e-23371288110Heat shock factor protein 1
5hdn_A1e-23371288110Heat shock factor protein 1
5hdn_B1e-23371288110Heat shock factor protein 1
5hdn_C1e-23371288110Heat shock factor protein 1
5hdn_D1e-23371288110Heat shock factor protein 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1125130TRRRKT
2160165RLRRDR
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00371DAPTransfer from AT3G22830Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA27011
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469753.10.0heat stress transcription factor A-6b
SwissprotQ9LUH81e-117HFA6B_ARATH; Heat stress transcription factor A-6b
TrEMBLA0A2K3P2900.0A0A2K3P290_TRIPR; Heat stress transcription factor a-6b-like protein
STRINGGLYMA20G28870.11e-151(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110034105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22830.11e-119heat shock transcription factor A6B