PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA26941 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | ZF-HD | ||||||||
Protein Properties | Length: 275aa MW: 31376.6 Da PI: 9.4141 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 96.1 | 2.8e-30 | 64 | 117 | 5 | 59 |
ZF-HD_dimer 5 rYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 Y+eC+kNhA+s+GghavDGC+Ef+++ geegt +a+ CaAC+CHRnFHR+e + Tp57577_TGAC_v2_mRNA26941 64 LYRECQKNHAVSIGGHAVDGCCEFLAA-GEEGTLEAVICAACNCHRNFHRKEIDG 117 7*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.3E-27 | 64 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 1.0E-19 | 65 | 117 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 26.997 | 65 | 114 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 1.0E-26 | 65 | 115 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
SuperFamily | SSF46689 | 6.91E-18 | 196 | 267 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.7E-28 | 199 | 267 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 6.0E-24 | 209 | 265 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 275 aa Download sequence Send to blast |
MVEESKEELD EFSVGMFFNF TIDISPKKPV NLLVNYLFLR RWKAKWNLKT TKRKKKKKKK 60 WDSLYRECQK NHAVSIGGHA VDGCCEFLAA GEEGTLEAVI CAACNCHRNF HRKEIDGEIT 120 SHNQQRSSHH TQYHHNQHPH QHHQISPYYH RAALPPPPGY HHMVTPPPVS HHRPLALPPA 180 ASSGGFSRED DDVSIPSSSG GGGGGSGMKK RFRTKFTPEQ KEKMLAFADQ IGWRIQKEDE 240 GAIEQFCAEN CIKRNVLKVW MHNNKHTRVL NRDE* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 4e-25 | 210 | 267 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 51 | 59 | KRKKKKKKK |
2 | 53 | 59 | KKKKKKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA26941 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004501619.1 | 1e-100 | zinc-finger homeodomain protein 2-like | ||||
Swissprot | Q6YXH5 | 2e-59 | ZHD1_ORYSJ; Zinc-finger homeodomain protein 1 | ||||
TrEMBL | A0A2K3MZZ8 | 1e-127 | A0A2K3MZZ8_TRIPR; ZF-HD homeobox-like protein | ||||
STRING | XP_004501619.1 | 1e-100 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G24660.1 | 4e-53 | homeobox protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA26941 |
Publications ? help Back to Top | |||
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