PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26902
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 325aa    MW: 36081.1 Da    PI: 5.9945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26902genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.91.5e-12140186455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 h ++Er+RR+++ +++  L  l+P +     kK++Ka++L  Av+Y+k+Lq
  Tp57577_TGAC_v2_mRNA26902 140 DHIIAERKRREKLSQCLIALAALIPGL-----KKMDKASVLGDAVKYVKELQ 186
                                699************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.18136185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-15140199IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-10140186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.52E-12141190No hitNo description
SuperFamilySSF474592.75E-16141198IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.9E-14142191IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MDKLNTSSNT SSTSWLSNML FEEIDIEGCG DLFQQCEQNL FGDEEFLTHD IASVLQQDEI  60
LLEQSESYSM ERPNKKLKPN TILQDVSPVS SPSSTTSQIL SFDCTLNTTK QNEVVPLSSQ  120
KHVQLPQNRG SKRSVAHNQD HIIAERKRRE KLSQCLIALA ALIPGLKKMD KASVLGDAVK  180
YVKELQERLK VLEEKNKNSN STSPVECVVT MNNGPQLSYD SSSNDESEAE AGSGNNEVLE  240
PHVDARILDK DVLIRIHCKK QKGLLLKVLF EIQKLNLFVV NSSVLPFGDS ILDITIVAQM  300
GTGYKLTRNG LIKSLRVAAL RYMS*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1144149ERKRRE
2145150RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26902
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1390344e-67BT139034.1 Medicago truncatula clone JCVI-FLMt-7C6 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611493.11e-129transcription factor bHLH18
TrEMBLG7K1251e-128G7K125_MEDTR; Basic helix loop helix (BHLH) DNA-binding family protein
STRINGAES944511e-128(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.11e-43bHLH family protein