PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26847
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family LFY
Protein Properties Length: 420aa    MW: 47833.2 Da    PI: 6.7898
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26847genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY525.12.9e-16013311336
                    FLO_LFY   1 mdpeafsaslfkwdpraaa..aapp...arlleeaavse.apleaaaaaaarklreleelfkayGvryltvakiaelGftvstL 78 
                                mdp+af+aslfkwdpr++   a pp   +++l  +++++ ap++ + a   r+l +leelf+ayG+ry+t+akiaelGftvstL
  Tp57577_TGAC_v2_mRNA26847   1 MDPDAFTASLFKWDPRNVLstA-PPprpSQILDYTVAPSaAPMSYHPARLPRELGGLEELFQAYGIRYYTAAKIAELGFTVSTL 83 
                                9***************998432.33344444443333331446666666677788***************************** PP

                    FLO_LFY  79 vdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkllsedeetaldalsqeglseepvqe.ekeaa 161
                                vdmkd+eldd+m+sls+ifr+dllvGeryGikaa+raerrrl+eee   krr lls d++++ldalsqeglseepv + ekea+
  Tp57577_TGAC_v2_mRNA26847  84 VDMKDDELDDMMNSLSQIFRWDLLVGERYGIKAAIRAERRRLDEEE--MKRRGLLSGDTTNTLDALSQEGLSEEPVVQrEKEAV 165
                                ********************************************88..88999**********************999677788 PP

                    FLO_LFY 162 gsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkseededeeeeededeegsgedgeerqrehPfivtepgevargk 245
                                gsgg++  ++e++++ee     ++k++ + +++r k+k  + ++ e+ee ee++++++sg  g erqrehPfivtepgevargk
  Tp57577_TGAC_v2_mRNA26847 166 GSGGGS--TWEVAVVEE-----RRKRQ-QIRRRRMKMKG-NLDHGENEEGEEEDEDNNSGGCGGERQREHPFIVTEPGEVARGK 240
                                888877..999998873.....33333.23455555554.445566666667777777778899******************** PP

                    FLO_LFY 246 knGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafker 329
                                knGLDYLf+LyeqCrefL+qvq+iakerGekcPtkvtnqvfryakkagasyinkPkmrhYvhCYalhcLdee sn+lrr fker
  Tp57577_TGAC_v2_mRNA26847 241 KNGLDYLFHLYEQCREFLIQVQAIAKERGEKCPTKVTNQVFRYAKKAGASYINKPKMRHYVHCYALHCLDEEVSNELRRGFKER 324
                                ************************************************************************************ PP

                    FLO_LFY 330 genvGaw 336
                                genvGa 
  Tp57577_TGAC_v2_mRNA26847 325 GENVGAX 331
                                *****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016987.5E-1681331IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 420 aa     Download sequence    Send to blast
MDPDAFTASL FKWDPRNVLS TAPPPRPSQI LDYTVAPSAA PMSYHPARLP RELGGLEELF  60
QAYGIRYYTA AKIAELGFTV STLVDMKDDE LDDMMNSLSQ IFRWDLLVGE RYGIKAAIRA  120
ERRRLDEEEM KRRGLLSGDT TNTLDALSQE GLSEEPVVQR EKEAVGSGGG STWEVAVVEE  180
RRKRQQIRRR RMKMKGNLDH GENEEGEEED EDNNSGGCGG ERQREHPFIV TEPGEVARGK  240
KNGLDYLFHL YEQCREFLIQ VQAIAKERGE KCPTKVTNQV FRYAKKAGAS YINKPKMRHY  300
VHCYALHCLD EEVSNELRRG FKERGENVGA XXXXXXXXXX XXXXXXXXXX WRSLHVKDGI  360
LMQYSTHIRV FPYGTCQQNS VSFVMLRETV LLLRAPSLLE GPTFLSKTAC FYSIFISIN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A2e-702193302113PROTEIN LEAFY
2vy2_A2e-702193302113PROTEIN LEAFY
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1180190RRKRQQIRRRR
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26847
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003602745.10.0protein UNIFOLIATA
SwissprotO485590.0UNI_PEA; Protein UNIFOLIATA
TrEMBLQ5BN330.0Q5BN33_MEDTR; Floral meristem identity control protein LEAFY (LFY) protein
STRINGAES729960.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80333346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-69floral meristem identity control protein LEAFY (LFY)