PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26831
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MIKC_MADS
Protein Properties Length: 203aa    MW: 23692.3 Da    PI: 8.3945
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26831genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF87.95.5e-28958150
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                               krien++nrqvtfskRrng++KKA+ELS+LCd+++a+i+fs++++l  +s
  Tp57577_TGAC_v2_mRNA26831  9 KRIENTTNRQVTFSKRRNGLIKKAYELSILCDIDIALIMFSPSNRLSHFS 58
                               79********************************************9997 PP
2K-box21.59.5e-091432011169
                      K-box  11 eakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskK 69 
                                +++ e+lqqe+++L++++++ ++++R +  e L+  s+ eL+  e+++ + l ++ ++K
  Tp57577_TGAC_v2_mRNA26831 143 NSEIEELQQEVSRLQQQLQMAEEQIRIYEPEPLKMTSMAELETSEKNVVETLARVMQRK 201
                                56789**************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004328.5E-38160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006629.52161IPR002100Transcription factor, MADS-box
CDDcd002658.83E-34272No hitNo description
SuperFamilySSF554555.89E-28273IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-26323IPR002100Transcription factor, MADS-box
PfamPF003196.7E-261057IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004045.0E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512976.702146202IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010152Biological Processpollen maturation
GO:0080092Biological Processregulation of pollen tube growth
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 203 aa     Download sequence    Send to blast
MGRVKLEIKR IENTTNRQVT FSKRRNGLIK KAYELSILCD IDIALIMFSP SNRLSHFSGK  60
KRYALIAPYS SYMDFISFIE DVLTRYINLP DNERDNAVSF PELPYRRGIQ NKEYLLRTLQ  120
QLRSENDIAL HMSKFVNIPG DINSEIEELQ QEVSRLQQQL QMAEEQIRIY EPEPLKMTSM  180
AELETSEKNV VETLARVMQR KV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A4e-19172172MEF2 CHIMERA
6byy_B4e-19172172MEF2 CHIMERA
6byy_C4e-19172172MEF2 CHIMERA
6byy_D4e-19172172MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that forms a heterodimer with the MADS-box protein AGL30 and is involved in the regulation of pollen maturation at the late stages of pollen development and pollen tube growth. {ECO:0000269|PubMed:19211705}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26831
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027187592.11e-114agamous-like MADS-box protein AGL104
SwissprotQ1PFC21e-81AGL66_ARATH; Agamous-like MADS-box protein AGL66
TrEMBLA0A3Q7Y8351e-112A0A3Q7Y835_CICAR; agamous-like MADS-box protein AGL104
STRINGXP_004490359.11e-113(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85252735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.16e-75AGAMOUS-like 66
Publications ? help Back to Top
  1. Zhang S, et al.
    FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development.
    Plant Physiol., 2018. 177(1): p. 285-299
    [PMID:29523711]