PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26821
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family SBP
Protein Properties Length: 1030aa    MW: 113061 Da    PI: 7.5213
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26821genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP129.61.1e-40141218178
                                --SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
                        SBP   1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                                +Cqve+C+adls+ak+yhrrhkvC+vhska+++lv +++qrfCqqCsrfh l+efDe+krsCrrrLa+hn+rrrk+++
  Tp57577_TGAC_v2_mRNA26821 141 VCQVEDCRADLSSAKDYHRRHKVCDVHSKASKALVGNVMQRFCQQCSRFHVLDEFDEGKRSCRRRLAGHNKRRRKTHP 218
                                6**************************************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.102.6E-32136203IPR004333Transcription factor, SBP-box
PROSITE profilePS5114132.069139216IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.09E-37140220IPR004333Transcription factor, SBP-box
PfamPF031104.1E-29142215IPR004333Transcription factor, SBP-box
SMARTSM002481300795825IPR002110Ankyrin repeat
SuperFamilySSF484031.32E-9798913IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.206.1E-8800912IPR020683Ankyrin repeat-containing domain
CDDcd002046.05E-10800910No hitNo description
PROSITE profilePS502979.516851911IPR020683Ankyrin repeat-containing domain
SMARTSM002480.62851881IPR002110Ankyrin repeat
PROSITE profilePS500888.683851874IPR002110Ankyrin repeat
SMARTSM002482700891919IPR002110Ankyrin repeat
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1030 aa     Download sequence    Send to blast
MDAKFDGKNK HLYGPVVPEL KGGSVGMESS KWDLNDWRWD GDLFTAKQLN SVPTDCRNRQ  60
LLQVDPEVSQ NVDASKNLAS GERSRELEKR RRDFVGEGLE MNDDIGSLNL NLGGQVYPIM  120
EGEEKSGKQM KIGVTTSNRA VCQVEDCRAD LSSAKDYHRR HKVCDVHSKA SKALVGNVMQ  180
RFCQQCSRFH VLDEFDEGKR SCRRRLAGHN KRRRKTHPDG AEVNGGPPNE ERGSSYLLMS  240
LLRILSNMHS SGEDHTRNVD VISRLVGNLT SLAGTFNGRN ITSLLVGPQD LVKAGTSGAA  300
QYIPNSNANG AEPPRPIDSR VEMSNGLIRQ DPPESRLLCA TVPVNHTTQK GIPLSRVGGV  360
GCLKPPLVPH SSNVLPSRGS LPPRPVGAET TAGRNGLSNI DLNSVYDDVE DYVENPTNSR  420
PHVALGVGSH GHPSPVQCDS LKSSPPQTSR NSDSTSSQSP SSSSGEGQSR TDRIVFKLFG  480
KDPSDFPLVL RSQILSWLSH SPTEIESYIR PGCIVLTICL RLENSAWNEL CYNLGSSLRK  540
LLAASNDSLW RTGWIYTRVR HSVAILYNGQ VVLDVPLHLG SPQNCQILCV KPLAVSASAD  600
VKFTVKGLNL FLSSTRLLCA LEGKYLVEGM CNDLIDGADA AIGHHELQNL IFSCHIPNMT  660
GRGFIEVEDN GLSSCSFPFI VAEPEVCSEI CNLETVIEAA ETADDVQIKA KLMEEKTRAM  720
NFVQEMGWLL HRIRVKFRLG SMAPVQDPFH FNRYSWLVGF SMDHDWCAVM KKLLGIIFEG  780
EVDTGEHTSA ELALLNMGLL HKAVKRNCRP MVELLLNFVP VNASDGGDSK EMLLNKSPDR  840
FLFRPDTVGP AGLTPLHIAA SMNGYENVLD ALIDDPGKVG IEAWKSAKDN TGLTPNDYAS  900
LKGHYSYIQL VQRKTSKNDQ THVLDIPGTL VDGNTKKQSD VHKSSKVLSF HTEKIATTAM  960
PNHCGLCQQK LAYSSSGGMR RALVYRPAML SMVAIAAVCV CVALLFKSSP RVYYVFQPFS  1020
WESLDYGSI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A6e-301412151084squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210216KRRRKTH
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26821
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013463701.10.0squamosa promoter-binding-like protein 1
TrEMBLA0A2K3P3900.0A0A2K3P390_TRIPR; Squamosa promoter-binding-like protein 1-like
STRINGXP_004488200.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15393495
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G60030.10.0squamosa promoter-binding protein-like 12