PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA26813

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 397aa MW: 44559.7 Da PI: 7.9946

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA26813	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	33.2	9.6e-11	79	126	4	54
HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++ rE+ RRdr+N++f eL ++l + + K +Ka+iL Av+ + +L Tp57577_TGAC_v2_mRNA26813 79 SKACREKLRRDRLNDKFVELGSILEPG---RPAKTDKAAILIDAVRMVTQL 126 5678********************8...89************99988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF47459	9.03E-13	75	146	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profile	PS50888	12.97	75	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.37E-7	78	131	No hit	No description
Pfam	PF00010	1.9E-8	79	126	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	2.5E-12	79	148	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	6.0E-9	81	132	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 397 aa Download sequence Send to blast
MVSRENPNWF FDYGLIDEIS VPDPTFAVPS QGFTWPSQPF NVSSNVGAEI DSSLGDSGSL 60 KESGSKKRGR SESCAATSSK ACREKLRRDR LNDKFVELGS ILEPGRPAKT DKAAILIDAV 120 RMVTQLRGEA QKLKDANMGL QEKIKELKVE KNELRDEKQR LKTEKEKLEQ QLKSINAQPS 180 FLPAPPTALX XXXXXXXXXX XXXXXXXXLL HSLLHLLRKA KPMATSWYPF LVIQELQCGN 240 LCHLLQWIPH RIMYFVLQLP KLELCNSLSF HFGSRLYPIT NTFMALLVFN IEAVVTKDEF 300 QHLAFLCRTE IDSMGCITAG ILWLLKLEGS VGQSVMDQLG NLDIPSSSDV NAAEALGFRV 360 GLNFFKTDAL LKYSNRIGLL ECGQSYIFNQ LNSFIL*

Sequence ? help Back to Top

Protein Sequence Length: 397 aa Download sequence Send to blast

MVSRENPNWF FDYGLIDEIS VPDPTFAVPS QGFTWPSQPF NVSSNVGAEI DSSLGDSGSL  60
KESGSKKRGR SESCAATSSK ACREKLRRDR LNDKFVELGS ILEPGRPAKT DKAAILIDAV  120
RMVTQLRGEA QKLKDANMGL QEKIKELKVE KNELRDEKQR LKTEKEKLEQ QLKSINAQPS  180
FLPAPPTALX XXXXXXXXXX XXXXXXXXLL HSLLHLLRKA KPMATSWYPF LVIQELQCGN  240
LCHLLQWIPH RIMYFVLQLP KLELCNSLSF HFGSRLYPIT NTFMALLVFN IEAVVTKDEF  300
QHLAFLCRTE IDSMGCITAG ILWLLKLEGS VGQSVMDQLG NLDIPSSSDV NAAEALGFRV  360
GLNFFKTDAL LKYSNRIGLL ECGQSYIFNQ LNSFIL*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA26813

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT051569	1e-162	BT051569.1 Medicago truncatula clone MTYF5_F6_F7_F81G-O-15 unknown mRNA.
GenBank	BT134780	1e-162	BT134780.1 Medicago truncatula clone JCVI-FLMt-4N23 unknown mRNA.

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1602	34	86

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G54680.1	3e-69	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA26813