PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA26615 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 253aa MW: 27623.5 Da PI: 7.8472 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.5 | 7.2e-41 | 61 | 160 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrr+Ca++C+++pyf ++p+kfa+vhk+FGasnv+kll ++pe +r da++s+vyeA+ r+rdPvyG++g i++lq Tp57577_TGAC_v2_mRNA26615 61 PCAACKLLRRRCAEECPFSPYFSPHEPHKFAAVHKVFGASNVSKLLLEVPEGQRADAANSMVYEANLRLRDPVYGCMGAISTLQ 144 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 qq+++l+ael+++++e Tp57577_TGAC_v2_mRNA26615 145 QQVQSLQAELHAIRAE 160 ***********99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 25.161 | 60 | 161 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.7E-41 | 61 | 158 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0016020 | Cellular Component | membrane |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 253 aa Download sequence Send to blast |
MFGCPETGQE YYLTFFLFFL FVKERLDEIA KINSEGETSS QMGRKHIHGQ VIGTTLNTVT 60 PCAACKLLRR RCAEECPFSP YFSPHEPHKF AAVHKVFGAS NVSKLLLEVP EGQRADAANS 120 MVYEANLRLR DPVYGCMGAI STLQQQVQSL QAELHAIRAE ILKYKYREAA SFISSQQVSI 180 PTNANSQGLS QPLVLPTLDP PSPSLPPPQK VLASQSIILS SLSSSSGSSV YTTSKSTMSH 240 GSISSENIPY FI* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 1e-43 | 54 | 168 | 4 | 118 | LOB family transfactor Ramosa2.1 |
5ly0_B | 1e-43 | 54 | 168 | 4 | 118 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00283 | DAP | Transfer from AT2G30340 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA26615 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT143889 | 0.0 | BT143889.1 Medicago truncatula clone JCVI-FLMt-13L16 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615999.1 | 1e-116 | LOB domain-containing protein 13 isoform X1 | ||||
Swissprot | Q9AT61 | 4e-71 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | G7KFM6 | 1e-115 | G7KFM6_MEDTR; LOB domain protein | ||||
STRING | AES98957 | 1e-116 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G30340.1 | 3e-73 | LOB domain-containing protein 13 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA26615 |
Publications ? help Back to Top | |||
---|---|---|---|
|