PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26528
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 383aa    MW: 41513.9 Da    PI: 8.9422
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26528genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH38.12.7e-12310355655
                                HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                +++Er RR +i +++ +L+el+P+     +k  + +++L +Av+YIk+Lq
  Tp57577_TGAC_v2_mRNA26528 310 SIAERVRRTKISERMRKLQELVPNM----DKQTNTSDMLDLAVDYIKNLQ 355
                                689*********************7....688*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.748304354IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-15307369IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.60E-12308357No hitNo description
Gene3DG3DSA:4.10.280.101.9E-14309367IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.8E-9310355IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.0E-10310360IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048573Biological Processphotoperiodism, flowering
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 383 aa     Download sequence    Send to blast
MDSNTHQLKQ QNQPNSGLLR FRSAPTSLFS NLTPSSVVDD NNNNNKGSKH FWDDSESRFV  60
SNDNISGLSC SKEMNSGYGG VGGGLPPHYP RHGSAAATSS SAMDGSFGLV GSLGMDHETS  120
SHKSFGSNLL RQGSSPAGLF SNISFQNGFA TMKGVGNYAT VNGNNGELSP SMNRLSSQVS  180
FPSRNASSLG MLSHISEIDS EDIEATSPDD GGSNGDTTHY GSGFPYSSWN DTQSFSENLS  240
GLKRGRSSNE KMFSDFQSGG LGNQVHTLSH HLSLPKTSSE MIAMEKLFQF PDSVPCKIRA  300
KRGCATHPRS IAERVRRTKI SERMRKLQEL VPNMDKQTNT SDMLDLAVDY IKNLQKQFKS  360
LSDKRANCKC MRIQKAVTNQ IP*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00308DAPTransfer from AT2G42280Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26528
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013467539.10.0transcription factor bHLH130
SwissprotQ66GR35e-98BH130_ARATH; Transcription factor bHLH130
TrEMBLA0A072VIY50.0A0A072VIY5_MEDTR; Putative transcription factor bHLH family
STRINGXP_004497939.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51773253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G42280.14e-98bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]