PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26432
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family ERF
Protein Properties Length: 312aa    MW: 35739.1 Da    PI: 4.7648
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26432genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP258.71.4e-184493255
                        AP2  2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                               ++ GVr+++ +grWvAeI+d      ++ r++lg+++tae+Aa+a+++a+  l+g
  Tp57577_TGAC_v2_mRNA26432 44 RFVGVRQRP-SGRWVAEIKDtI----QKIRVWLGTYDTAEKAARAYDEAACILRG 93
                               789******.7*********33....35**********************99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.70E-3143100No hitNo description
PfamPF008471.9E-134493IPR001471AP2/ERF domain
PROSITE profilePS5103219.38844101IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.5E-2744100IPR001471AP2/ERF domain
SMARTSM003803.5E-3644107IPR001471AP2/ERF domain
SuperFamilySSF541714.9E-1944101IPR016177DNA-binding domain
PRINTSPR003671.9E-74556IPR001471AP2/ERF domain
PRINTSPR003671.9E-76783IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 312 aa     Download sequence    Send to blast
MSRKRKVSET LVEDISPYET IKEWNEVMKE STQSSSQGTK NRKRFVGVRQ RPSGRWVAEI  60
KDTIQKIRVW LGTYDTAEKA ARAYDEAACI LRGSNTRTNF LPSSKSSSST HVLPSKIINL  120
LLQRLKARTY PYFFDGLEED YSTSNNIEFC NSSTSAQIDD ITSGFESCLT EKVESICKEK  180
EMNIECNLNY VMTQTTSSDE KEEDIEENID LSFQQNFQFL DNVNDVAMNY YCPFDIEEHV  240
ELEINDDDES SMLRNAMKRM KYERKISASL YAFNGIPECL KLKLGSENKA IDFSNELTNL  300
KMACNKNKID A*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4173001e-113EU417300.1 Trifolium repens clone CloverSSR-073_A12_048_1 microsatellite sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027925885.11e-101ethylene-responsive transcription factor ERN1-like
TrEMBLA0A2K3LC511e-121A0A2K3LC51_TRIPR; Ethylene-responsive transcription factor
STRINGXP_007139548.12e-99(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33383267
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.14e-24related to AP2 11