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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Tp57577_TGAC_v2_mRNA26430 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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| Family | M-type_MADS | ||||||||
| Protein Properties | Length: 338aa MW: 38240.4 Da PI: 5.1541 | ||||||||
| Description | M-type_MADS family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | SRF-TF | 83.9 | 9.5e-27 | 16 | 62 | 1 | 47 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
k+ien++nrqvtfskRrng++KKA+ELSvLCd++va+i+fs++g+
Tp57577_TGAC_v2_mRNA26430 16 KKIENTTNRQVTFSKRRNGLIKKAYELSVLCDVDVALIMFSPSGRAT 62
68*****************************************9865 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| PROSITE profile | PS50066 | 29.226 | 8 | 68 | IPR002100 | Transcription factor, MADS-box |
| SMART | SM00432 | 1.1E-36 | 8 | 67 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 4.16E-38 | 9 | 82 | No hit | No description |
| SuperFamily | SSF55455 | 9.68E-31 | 9 | 91 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.9E-25 | 10 | 30 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.0E-25 | 17 | 62 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.9E-25 | 30 | 45 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 7.9E-25 | 45 | 66 | IPR002100 | Transcription factor, MADS-box |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| GO:0046983 | Molecular Function | protein dimerization activity | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 338 aa Download sequence Send to blast |
MKEEKKEMGR VKLQIKKIEN TTNRQVTFSK RRNGLIKKAY ELSVLCDVDV ALIMFSPSGR 60 ATLFSGNKSF EEILERYINL PDTERGKLHN EENIRKLLRK LKVETDQICQ VRSPMVTDPQ 120 LKEVQREILI WKTQLEEMKN RLRIFEGDPS EITTLCEAEY RVQVLQETLK QVQLRKCFLE 180 EEQISHASPQ VHLTKTVDVD GFVAGTTENA LSWFPQGDTN DQILNFVNAY GPPPLSDQQA 240 MSTVVNMVTP TSTLLHSGNI NGDCQISPGN GTDAEINNTP QFGQITDNNL SSWEHLHHLE 300 NGALSVAETR DGQLLEQYLS QVAMANVLMS NQDQLQI* |
| 3D Structure ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
| 1tqe_P | 2e-15 | 8 | 77 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_Q | 2e-15 | 8 | 77 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_R | 2e-15 | 8 | 77 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 1tqe_S | 2e-15 | 8 | 77 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6byy_A | 1e-15 | 8 | 77 | 1 | 69 | MEF2 CHIMERA |
| 6byy_B | 1e-15 | 8 | 77 | 1 | 69 | MEF2 CHIMERA |
| 6byy_C | 1e-15 | 8 | 77 | 1 | 69 | MEF2 CHIMERA |
| 6byy_D | 1e-15 | 8 | 77 | 1 | 69 | MEF2 CHIMERA |
| 6bz1_A | 1e-15 | 8 | 77 | 1 | 69 | MEF2 CHIMERA |
| 6bz1_B | 1e-15 | 8 | 77 | 1 | 69 | MEF2 CHIMERA |
| 6bz1_C | 1e-15 | 8 | 77 | 1 | 69 | MEF2 CHIMERA |
| 6bz1_D | 1e-15 | 8 | 77 | 1 | 69 | MEF2 CHIMERA |
| 6c9l_A | 2e-15 | 8 | 77 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_B | 2e-15 | 8 | 77 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_C | 2e-15 | 8 | 77 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_D | 2e-15 | 8 | 77 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_E | 2e-15 | 8 | 77 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| 6c9l_F | 2e-15 | 8 | 77 | 1 | 69 | Myocyte-specific enhancer factor 2B |
| Search in ModeBase | ||||||
| Cis-element ? help Back to Top | |
|---|---|
| Source | Link |
| PlantRegMap | Tp57577_TGAC_v2_mRNA26430 |
| Regulation -- PlantRegMap ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Upstream Regulator | Target Gene | ||||
| PlantRegMap | Retrieve | - | ||||
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AM475322 | 3e-52 | AM475322.2 Vitis vinifera contig VV78X237798.10, whole genome shotgun sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_004501539.1 | 1e-179 | agamous-like MADS-box protein AGL104 | ||||
| TrEMBL | A0A2K3PNN3 | 0.0 | A0A2K3PNN3_TRIPR; MADS-box transcription factor | ||||
| STRING | AES83963 | 0.0 | (Medicago truncatula) | ||||
| STRING | AES85612 | 0.0 | (Medicago truncatula) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF13665 | 19 | 22 |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT1G22130.1 | 2e-51 | AGAMOUS-like 104 | ||||
| Link Out ? help Back to Top | |
|---|---|
| Phytozome | Tp57577_TGAC_v2_mRNA26430 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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