PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA26360 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 193aa MW: 22455.7 Da PI: 9.1848 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 87.3 | 2.3e-27 | 28 | 116 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleH 85 fY+eYA++vGF +r+ + ++s+r+g+i r+f C+keg+ + + k r+tra++r gCka++++k +k++kw++tk++++H Tp57577_TGAC_v2_mRNA26360 28 FYDEYARHVGFVMRVMSCRRSERDGRILARRFGCNKEGHCVSIRGKLGPVRKTRASSREGCKAMIHIKYDKSEKWVITKFVKDH 111 9***************************************9999999************************************* PP FAR1 86 nHela 90 nH+l+ Tp57577_TGAC_v2_mRNA26360 112 NHPLV 116 ***96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.1E-24 | 28 | 116 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
LGSSHHDRAI QEPYEGMEFA SEDAAKIFYD EYARHVGFVM RVMSCRRSER DGRILARRFG 60 CNKEGHCVSI RGKLGPVRKT RASSREGCKA MIHIKYDKSE KWVITKFVKD HNHPLVVSPR 120 EARQTMDEKD KKIQDLTADL RIKKRLCVTY QEQLTSFMKI VEEHSDKLSA RIHHILDNLK 180 EYESIEELLH QT* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription activator involved in regulating light control of development. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA26360 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT144425 | 0.0 | BT144425.1 Medicago truncatula clone JCVI-FLMt-6J23 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013458769.1 | 1e-128 | protein FAR1-RELATED SEQUENCE 2 | ||||
Refseq | XP_024633927.1 | 1e-128 | protein FAR1-RELATED SEQUENCE 2 | ||||
Swissprot | Q9SZL8 | 2e-22 | FRS5_ARATH; Protein FAR1-RELATED SEQUENCE 5 | ||||
TrEMBL | A0A2K3PLX7 | 1e-138 | A0A2K3PLX7_TRIPR; FAR-RED impaired response-like protein | ||||
STRING | XP_004507548.1 | 1e-124 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF965 | 31 | 104 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G43280.1 | 1e-100 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA26360 |
Publications ? help Back to Top | |||
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