PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26332
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 278aa    MW: 30579.5 Da    PI: 10.3449
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26332genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding37.84.3e-12112156347
                                SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                                +WT++E+  +  + +++G+g+W+ I++ +  +Rt+ q+ s+ qky
  Tp57577_TGAC_v2_mRNA26332 112 SWTEDEHRMFMVGLEKMGKGDWRGISKNFVPTRTPTQVASHAQKY 156
                                7*****************************9*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.60.102.0E-4321IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129416.567105161IPR017930Myb domain
SuperFamilySSF466892.65E-17106161IPR009057Homeodomain-like
TIGRFAMsTIGR015578.6E-17108159IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.603.7E-11109155IPR009057Homeodomain-like
SMARTSM007171.8E-9109159IPR001005SANT/Myb domain
PfamPF002491.9E-10112156IPR001005SANT/Myb domain
CDDcd001672.16E-9112157No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MGRRKCSHCG KIGHNCRTCT SFTLGVGGLR LFGVQLSSSN SSIHNNSTII KKSFSMDTFP  60
SPSSPSSSFS SSTSLTNIDD NHHHHHKSTS SNIAYLSDCF IGPPQERKKG VSWTEDEHRM  120
FMVGLEKMGK GDWRGISKNF VPTRTPTQVA SHAQKYFLRL STINNKKRRS SLFDLVGSKN  180
TNTKGQGNAN SIVLSHKSEN KCKCEVEIND GTTFFKQEVV KSDKQETNYS QVNWLHNHSS  240
KYATVPNLDL TLAVAPPKKT NKTTPAGPLL FGPISVT*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26332
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630638.11e-127transcription factor MYBS3
TrEMBLA0A2K3LYS51e-173A0A2K3LYS5_TRIPR; Transcription factor MYB 1R1
STRINGAET051141e-127(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF32133271
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56840.18e-43MYB_related family protein