PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26273
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 422aa    MW: 48370.9 Da    PI: 6.1593
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26273genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY54.52.4e-17197225129
                                ---SS-EEEEEEE--TT-SS-EEEEEE-S CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCts 29 
                                +dDgy+WrKYGqK+vk+s++prsYYrCt 
  Tp57577_TGAC_v2_mRNA26273 197 MDDGYKWRKYGQKPVKNSPYPRSYYRCTA 225
                                59*************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.4E-18182225IPR003657WRKY domain
SuperFamilySSF1182902.75E-15190225IPR003657WRKY domain
PROSITE profilePS5081118.131192225IPR003657WRKY domain
SMARTSM007741.9E-8197239IPR003657WRKY domain
PfamPF031061.7E-12198225IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MANSSAAAFL DEIPNKKNKE SCIINFPFSP ALPSYSIFDM IPPPSQSDDN HHHHQKASSF  60
GYMDLLSTQE FTTSSTLFDW LPTTDDDMQL PPLPVPSPTA TSEVLNNPAT PVSLSSSISS  120
SSHEAGVANK SVAENEDELG FEEPGDKNGV HGIRLVENQN DQQDQTKKQV KPARKRKNNK  180
QRAPRITFKT RTDVDHMDDG YKWRKYGQKP VKNSPYPRSY YRCTAIXXXX XXXXXXXXXX  240
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  300
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  360
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXNV PLLDSDDFVA  420
F*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26273
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003609797.22e-66probable WRKY transcription factor 23
TrEMBLA0A2K3PDB01e-164A0A2K3PDB0_TRIPR; WRKY transcription factor
STRINGAES919948e-66(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2119334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18170.15e-21WRKY DNA-binding protein 28