PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA26222
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 806aa    MW: 89111.8 Da    PI: 6.2027
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA26222genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.22.2e-11164207755
                                HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                                ++ErrRR+++ ++++ Lr+++P+ +      K++Ka+iL  A +Y+k+Lq
  Tp57577_TGAC_v2_mRNA26222 164 MAERRRRKKLCDRMHMLRSIVPNiS------KMDKASILGDAADYLKELQ 207
                                79*********************66......******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.62E-16156224IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.885157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-13163212IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.4E-9164207IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.1E-16164218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.49E-10164210No hitNo description
CDDcd048730.00112275335No hitNo description
PfamPF060681.1E-185364764IPR010339TIP49, C-terminal
SuperFamilySSF525408.39E-35387502IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3008.5E-24388474IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000095.50E-7390480No hitNo description
SMARTSM003826.2E-10412714IPR003593AAA+ ATPase domain
SuperFamilySSF525408.39E-35548785IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3008.5E-24647706IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:1.10.8.607.1E-9707782No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048507Biological Processmeristem development
GO:2000072Biological Processregulation of defense response to fungus, incompatible interaction
GO:0005730Cellular Componentnucleolus
GO:0005829Cellular Componentcytosol
GO:0009507Cellular Componentchloroplast
GO:0003678Molecular FunctionDNA helicase activity
GO:0005524Molecular FunctionATP binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 806 aa     Download sequence    Send to blast
MTHAVGFGSI GLEGESSFGG PGPSNSSFFS KAEISRPLND FSANFVPSTN EICSDIGKTN  60
KFESLPISQF ASTWLKEFGK MREKEGSEVV EGGLNYESNE VVDVANMENN GRNDYNANNN  120
DGGNNNNNNI VFNNDDGDEN HRDDEWERKV KKKKKKERTT KSLMAERRRR KKLCDRMHML  180
RSIVPNISKM DKASILGDAA DYLKELQQKI NNLQSELEPS TPGLFNVTPT IPTLLVPLKE  240
ELCHSNVSSP KNQSTKFLRN SQVEVREREG GTVDIHVSCT HKSGILHLTM MTLDNLGLDV  300
HQAVINCFNG FSIDVFKAKQ YREGQKVLPE QIKAVLLNTL SFHGMIEMEK MKIEEVQSTT  360
KKQRVATHTH IKGLGLEVTG KPLPFASGFV GQAEAREACG LVVDMIRQKK MAGKALLLAG  420
PPGTGKTALA LGICQELGTK VPFCPMVGSE VYSTEVKKTE VLMENFRRAI GLRIKENKEV  480
YEGEVTELSP EETESITGGY GKSISHVIIG LKTVKGTKQL KLDPTIYDAL IKEKVAVGDV  540
IYIEANSGAV KRVGRSDAFA TEFDLEAEEY VPLPKGEVHK KKEIVQDVTL HDLDAANARP  600
QGGQDILSLM GQMMKPRKTE ITDKLRQEIN KVVNRYIDEG VAELVPGVLF IDEVHMLDME  660
CFSYLNRALE SSLSPIVIFA TNRGICTVRG TDMTSPHGIP VDLLDRLVII RTQTYGPAEI  720
IQILAIRAQV EELVVDEESL AFLGEIGQQT SLRHAVQLLS PASVVAKING RDNICKADLE  780
EICSLYLDAK SSAKLLQEQQ EKYIT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2c9o_A0.03518041455RUVB-LIKE 1
2c9o_B0.03518041455RUVB-LIKE 1
2c9o_C0.03518041455RUVB-LIKE 1
5oaf_A0.03518041455RuvB-like 1
5oaf_C0.03518041455RuvB-like 1
5oaf_E0.03518041455RuvB-like 1
6fo1_A0.03518041455RuvB-like 1
6fo1_B0.03518041455RuvB-like 1
6fo1_C0.03518041455RuvB-like 1
6hts_A0.03518041455RuvB-like 1
6hts_C0.03518041455RuvB-like 1
6hts_E0.03518041455RuvB-like 1
6qi8_A0.03518041455RuvB-like 1
6qi8_B0.03518041455RuvB-like 1
6qi8_C0.03518041455RuvB-like 1
6qi9_A0.03518041455RuvB-like 1
6qi9_B0.03518041455RuvB-like 1
6qi9_C0.03518041455RuvB-like 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1147155RKVKKKKKK
2147156RKVKKKKKKE
3151169KKKKKERTTKSLMAERRRR
4153171KKKERTTKSLMAERRRRKK
5154172KKERTTKSLMAERRRRKKL
6165172ERRRRKKL
Functional Description ? help Back to Top
Source Description
UniProtProposed core component of the chromatin remodeling INO80 complex which is involved in transcriptional regulation, DNA replication and probably DNA repair. Component of the NuA4 histone acetyltransferase complex which is involved in transcriptional activation of select genes principally by acetylation of nucleosomal histones H4 and H2A. Has single-stranded DNA-stimulated ATPase and ATP-dependent DNA helicase (3' to 5') activity suggesting a role in nuclear processes such as recombination and transcription (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA26222
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ2762640.0AJ276264.1 Cicer arietinum mRNA for putative Ruv DNA-helicase.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001265936.10.0ruvB-like protein 1
SwissprotQ9FMR90.0RIN1_ARATH; RuvB-like protein 1
TrEMBLA0A2K3PMF80.0A0A2K3PMF8_TRIPR; RuvB-like helicase
STRINGXP_004501479.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G26744.42e-63bHLH family protein
Publications ? help Back to Top
  1. Holt BF, et al.
    An evolutionarily conserved mediator of plant disease resistance gene function is required for normal Arabidopsis development.
    Dev. Cell, 2002. 2(6): p. 807-17
    [PMID:12062092]
  2. Van Damme D,Bouget FY,Van Poucke K,Inzé D,Geelen D
    Molecular dissection of plant cytokinesis and phragmoplast structure: a survey of GFP-tagged proteins.
    Plant J., 2004. 40(3): p. 386-98
    [PMID:15469496]
  3. Rajjou L, et al.
    Proteomic investigation of the effect of salicylic acid on Arabidopsis seed germination and establishment of early defense mechanisms.
    Plant Physiol., 2006. 141(3): p. 910-23
    [PMID:16679420]
  4. Geisler-Lee J, et al.
    A predicted interactome for Arabidopsis.
    Plant Physiol., 2007. 145(2): p. 317-29
    [PMID:17675552]
  5. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]