PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA26199

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

NF-YA

Protein Properties

Length: 183aa MW: 19740.4 Da PI: 10.8507

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA26199	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	99.1	4.4e-31	11	66	2	58
CBFB_NFYA 2 eplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 p YVNaKQy++I++RRq+Rak+ ++kl +k +kpy+heSRh hA+rRpRg+gGrF Tp57577_TGAC_v2_mRNA26199 11 GPTYVNAKQYHGIIRRRQSRAKAVLQNKL-IKRNKPYMHESRHLHAMRRPRGCGGRF 66 79*************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	2.1E-34	8	69	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	35.25	9	69	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.5E-22	12	34	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	3.9E-26	12	66	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	3.5E-22	43	66	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 183 aa Download sequence Send to blast
MLPLSMTSDD GPTYVNAKQY HGIIRRRQSR AKAVLQNKLI KRNKPYMHES RHLHAMRRPR 60 GCGGRFLNTK ISTDGNGKTG SEMKKKTGGG LQLQSSASQS SEVLQSEVGT LNSLKETNGG 120 SPNVSGSEVT SMYSQGGLDS FAVNHIRSSV HSLGDMVDTG HGIVMPTKWF ATAVTGRQLL 180 QP*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-17	10	70	2	62	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA26199

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	JQ918266	1e-170	JQ918266.1 Medicago truncatula CCAAT-binding transcription factor, subunit YA (NF-YA1) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_012570383.2	1e-100	LOW QUALITY PROTEIN: nuclear transcription factor Y subunit A-10
Swissprot	Q9M9X4	3e-43	NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBL	A0A2K3MR82	1e-127	A0A2K3MR82_TRIPR; Nuclear transcription factor Y subunit A-10-like protein
TrEMBL	A0A2Z6MFZ1	1e-128	A0A2Z6MFZ1_TRISU; Uncharacterized protein
STRING	XP_004497643.1	1e-104	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3794	34	64

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G05690.1	5e-37	nuclear factor Y, subunit A2

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA26199

Publications ? help Back to Top
Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722] Nasim Z,Fahim M,Ahn JH Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay. Front Plant Sci, 2017. 8: p. 191 [PMID:28261246] Zhang M,Hu X,Zhu M,Xu M,Wang L Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis. Sci Rep, 2017. 7(1): p. 1395 [PMID:28469131]