PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2600
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 508aa    MW: 58177.6 Da    PI: 6.0882
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2600genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix92.25.2e-29132217187
                  trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                               rW++qe+l L+e+r+++++++r++++k+plW e+s+ m +e g++rs k+Ckek+enl k+ykk+keg+ +r  ++ +++++f+q
  Tp57577_TGAC_v2_mRNA2600 132 RWPRQETLSLLEIRSRLDSKFRENNQKAPLWNEISRIMaEEFGYQRSGKKCKEKFENLYKYYKKTKEGKASR--QDGKHYRFFRQ 214
                               8*************************************7778*****************************8..55667****** PP

                  trihelix  85 lea 87 
                               lea
  Tp57577_TGAC_v2_mRNA2600 215 LEA 217
                               *85 PP
2trihelix38.23.7e-12421486266
                  trihelix   2 WtkqevlaLiearremeerlrr.gklkkplWeevskkmrergferspkqCkekwenlnkrykkike 66 
                               Wt+ e+  Li++r++ e+++r+ g l+   W+e+++km   gf+r+ ++Ck+ w+++++  ++  +
  Tp57577_TGAC_v2_mRNA2600 421 WTEMEISSLIQLRTSFEHQVREkGYLDDCVWDEIGEKMVYMGFNRNGVECKKIWDEISMSLRRSVD 486
                               *********************8478*********************************99988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.085125190IPR017877Myb-like domain
PfamPF138371.4E-19131218No hitNo description
CDDcd122032.15E-22131197No hitNo description
PfamPF138371.8E-7420486No hitNo description
PROSITE profilePS500906.063421478IPR017877Myb-like domain
Sequence ? help Back to Top
Protein Sequence    Length: 508 aa     Download sequence    Send to blast
MNNTDPYGLP EDLRRLISSS RNTNTQHLPA AEPPCQYGGS ASGSFPPPPP QNYCYNPPPI  60
IVGDVFYPRS SNNTFPHNYD YSSTVNPTTT ISTANSDHAT ASASAFCVGL ESCSIDINNK  120
GWFGNFDSSN NRWPRQETLS LLEIRSRLDS KFRENNQKAP LWNEISRIMA EEFGYQRSGK  180
KCKEKFENLY KYYKKTKEGK ASRQDGKHYR FFRQLEAICG EASTSDKNTP HVDAVVATQT  240
PNFTINQENI NGVVDHNLIN NLKYSESLSF SNSSEFETSS SENNDEDLSA IAHTMKTSKQ  300
KGVDKSDRRG RKSWRGKVEE IVDSHMKKII ETQDAWMERM LSVVEQREQE MALREEERKR  360
KESMRFDQEI HELWAKEKAW VEARDSALLE VVRKHIGVEA SSKNESNTNY EHPFGNVDHG  420
WTEMEISSLI QLRTSFEHQV REKGYLDDCV WDEIGEKMVY MGFNRNGVEC KKIWDEISMS  480
LRRSVDCGVK ITRPWCLGLK VTDDDDL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0941222e-94BT094122.1 Soybean clone JCVI-FLGm-18O17 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013469384.10.0trihelix transcription factor PTL
TrEMBLA0A2Z6LVP50.0A0A2Z6LVP5_TRISU; Uncharacterized protein
STRINGXP_004496179.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20223489
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03680.13e-78Trihelix family protein