PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA25931 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 154aa MW: 17987.5 Da PI: 8.8187 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 44.2 | 6.2e-14 | 38 | 106 | 1 | 69 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvk 69 kfY+ +A + GFs rk + ++ r++++ ++tf Cs+eg+r+++ + ++ +++++++tr+gC ak v+ Tp57577_TGAC_v2_mRNA25931 38 KFYCWFAIMFGFSFRKGHVIRN-RERHVLQQTFLCSREGFRDSKALNpDDLQHEQKTTTRCGCMAKCIVH 106 6********************9.5556****************999866778889999*****9998775 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 4.1E-12 | 38 | 106 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
MEGELSCENP EATNLDLKRR HLADISKYEF VNLDVAYKFY CWFAIMFGFS FRKGHVIRNR 60 ERHVLQQTFL CSREGFRDSK ALNPDDLQHE QKTTTRCGCM AKCIVHIDII PRRLARKTSA 120 GIEKKKAAAG KQTPTGKEKE RERQWEEEEE TRY* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA25931 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A2K3MEL2 | 6e-34 | A0A2K3MEL2_TRIPR; FAR1 DNA-binding domain protein (Fragment) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G28530.1 | 4e-06 | FAR1-related sequence 10 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA25931 |