PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA25895 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 159aa MW: 18318.8 Da PI: 8.4547 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 84.5 | 1.7e-26 | 54 | 144 | 1 | 91 |
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 +fYneY+k++GF +r+++ +ksk +g t+r+f+C keg+r +k++ ++++raetrtgC+a++++++++ gk++v +++ Tp57577_TGAC_v2_mRNA25895 54 DFYNEYSKKMGFGIRREYGNKSKIDGVLTSRRFTCFKEGNRGVDKRD-YLTKEPRAETRTGCQARMVISLDRkIGKYKVVDFVA 136 6******************************************9999.999*******************9989********** PP FAR1 84 eHnHelap 91 +HnH l+p Tp57577_TGAC_v2_mRNA25895 137 QHNHMLQP 144 *****986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 3.4E-22 | 54 | 144 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
LSENMNGSST PIAEGVQQLV NNIQVNIVEH SRESVVNYIP HLEMEFESEV ATYDFYNEYS 60 KKMGFGIRRE YGNKSKIDGV LTSRRFTCFK EGNRGVDKRD YLTKEPRAET RTGCQARMVI 120 SLDRKIGKYK VVDFVAQHNH MLQPNEYVHM LQCHPLLK* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA25895 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024633609.1 | 4e-78 | protein FAR1-RELATED SEQUENCE 5-like isoform X1 | ||||
Refseq | XP_024633610.1 | 1e-80 | protein FAR1-RELATED SEQUENCE 5-like isoform X2 | ||||
TrEMBL | A0A2K3LRX3 | 1e-112 | A0A2K3LRX3_TRIPR; Protein FAR1-related sequence 5-like | ||||
STRING | AES68720 | 5e-76 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF15115 | 2 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G59470.2 | 5e-23 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA25895 |